Factsheet for PGSC0003DMT400006173

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018596
PGSC0003DMT400048527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	PGSC0003DMT400018596	AT4G25160.1	16777956
AT5G64330.1	PGSC0003DMT400048527	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g047530.1.1	Tomato	cytosol	97.49	97.77
PGSC0003DMT400083737	Potato	cytosol	84.76	86.95
VIT_03s0038g00270.t01	Wine grape	cytosol	84.02	84.27
KRH42114	Soybean	cytosol	79.44	79.91
KRH10586	Soybean	cytosol	78.7	79.17
KRH23618	Soybean	cytosol	59.17	79.05
GSMUA_Achr3P20380_001	Banana	cytosol	66.86	78.61
KRH21782	Soybean	cytosol	78.55	78.43
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	80.47	72.82
CDX84515	Canola	cytosol	76.92	71.63
Bra024285.1-P	Field mustard	cytosol	76.78	71.59
AT5G64330.1	Thale cress	cytosol	77.66	70.38
CDY18715	Canola	cytosol	74.7	69.75
CDX81221	Canola	cytosol	75.0	69.45
Bra037773.1-P	Field mustard	cytosol	74.85	68.66
HORVU6Hr1G015480.1	Barley	cytosol	68.05	62.93
TraesCSU01G114000.1	Wheat	cytosol	68.34	62.77
TraesCS6B01G117400.1	Wheat	cytosol	68.49	62.74
TraesCS6A01G085100.1	Wheat	cytosol	67.75	62.65
Zm00001d016898_P001	Maize	cytosol	67.75	61.15
EES07014	Sorghum	nucleus	68.34	59.77
Os02t0568200-00	Rice	cytosol	66.57	59.06
Zm00001d004440_P001	Maize	cytosol	51.18	54.23
GSMUA_Achr1P21440_001	Banana	cytosol	47.63	52.96
KXG25806	Sorghum	cytosol	48.82	50.46
PGSC0003DMT400018688	Potato	cytosol	40.83	44.09
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	37.57	40.38
PGSC0003DMT400064174	Potato	cytosol	36.09	38.85
PGSC0003DMT400093531	Potato	cytosol	30.62	38.48
PGSC0003DMT400038537	Potato	cytosol	35.06	37.8
PGSC0003DMT400047866	Potato	cytosol	34.76	37.42
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	33.73	37.38
PGSC0003DMT400066161	Potato	cytosol	34.32	37.06
PGSC0003DMT400013928	Potato	cytosol	32.69	36.23
PGSC0003DMT400010359	Potato	cytosol	30.92	36.16
PGSC0003DMT400045508	Potato	cytosol	32.4	36.08
PGSC0003DMT400073584	Potato	cytosol	29.29	35.74
PGSC0003DMT400003100	Potato	cytosol	31.51	35.56
PGSC0003DMT400022573	Potato	cytosol	32.25	35.45
PGSC0003DMT400026008	Potato	cytosol	34.32	35.2
PGSC0003DMT400001154	Potato	cytosol	32.54	34.87
PGSC0003DMT400033866	Potato	cytosol	29.29	32.95
PGSC0003DMT400031245	Potato	cytosol	27.51	32.29
PGSC0003DMT400029528	Potato	cytosol	24.11	32.02

Protein Annotations

EntrezGene:102603903	MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356	UniProt:M0ZQY4	InterPro:NPH3-like
InterPro:NPH3_dom	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400002400	PGSC:PGSC0003DMG400002400	EnsemblPlants:PGSC0003DMT400006173	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI00029499A1
RefSeq:XP_006359786.1	SEG:seg	:	:	:	:

Description

NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) [Source:PGSC_GENE;Acc:PGSC0003DMG400002400]

Coordinates

chr10:+:30415369..30418004

Molecular Weight (calculated)

76398.1 Da

IEP (calculated)

7.914

GRAVY (calculated)

-0.438

Length

676 amino acids

Sequence
(BLAST)

001: MWESESESVS GRDYGNGVLS NTKHGVKTDG FEQKGQSWYV ETDIPSDLLV QIGDVSFHLH KYPLLSRSGK MNRIIYEARD EELSRIALND LPGGWDAFEL
101: AAKFCYGIAV DLTATNISGL RCAAEYLEMT EDLEEGNLIF KTEAFLSYVV LSSWRDSILV LKSCERLSPW AENLQIVRRC SESIAWKACA NPKGIKWQYT
201: GRLPTSVSSP KWNEMKDSSP SRNNQQLVPP DWWFEDVSIL RIDHFVRVIT AIKVKGMRHE LIGAVLMHYA TKWIPGLIKE GAGSLDDCNN SSISNSSSSS
301: SWKGGLHMIV SGSRDEVPPT VQAKDQRMII ESLISIIPQQ KDSVSCSFLL RLLRMANLLK VAPALVTELE KRVGMQFEQA MLADLLIPSY NKSETLYDVD
401: LVQRLLEHFL VQEQTESSSP SRSSFSEKHM HDANQRGTNL NAKMRVAKLV DSYLTEVSRD RNLSLTKFQV LAEALPESAR TCDDGLYRAI DSYLKAHPTL
501: SEHERKRLCR VMDCQKLSID ACMHAAQNER LPLRVVVQVL FSEQVKISNA ISSSSLKDAG ESHYQPLVSN RKTLLEATPQ SFQEGWTTAK KDINTLKFEL
601: DSVKAKYLQL QNDMENLQKQ FDKITKPKQG SGWTAGWKKL SKLTKMTHLE SQENSPHAPN AEPTRKTPRR WRNSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.