Factsheet for Zm00001d004440_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d045397_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	Zm00001d045397_P001	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25806	Sorghum	cytosol	85.42	83.33
GSMUA_Achr3P20380_001	Banana	cytosol	52.51	58.26
KRH23618	Soybean	cytosol	42.95	54.15
KRH10586	Soybean	cytosol	55.33	52.53
Zm00001d016898_P001	Maize	cytosol	61.44	52.34
VIT_03s0038g00270.t01	Wine grape	cytosol	55.17	52.23
KRH21782	Soybean	cytosol	55.33	52.14
KRH42114	Soybean	cytosol	54.23	51.49
PGSC0003DMT400006173	Potato	cytosol	54.23	51.18
Solyc10g047530.1.1	Tomato	cytosol	53.76	50.89
PGSC0003DMT400083737	Potato	cytosol	52.04	50.38
Solyc01g105680.2.1	Tomato	nucleus	52.19	49.78
Bra024285.1-P	Field mustard	cytosol	54.7	48.14
CDX84515	Canola	cytosol	54.55	47.93
CDX81221	Canola	cytosol	54.23	47.4
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	55.49	47.39
CDY18715	Canola	cytosol	53.6	47.24
Bra037773.1-P	Field mustard	cytosol	53.92	46.68
AT5G64330.1	Thale cress	cytosol	54.55	46.65
Zm00001d005769_P001	Maize	cytosol	32.13	32.8
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	32.29	32.75
Zm00001d045098_P001	Maize	cytosol	32.6	32.65
Zm00001d002146_P001	Maize	cytosol	31.03	31.94
Zm00001d043271_P001	Maize	cytosol	32.29	31.84
Zm00001d033344_P001	Maize	cytosol	31.66	31.81
Zm00001d048138_P007	Maize	cytosol	31.03	31.73
Zm00001d033941_P001	Maize	mitochondrion, plastid	31.35	31.7
Zm00001d047483_P002	Maize	plastid	32.13	31.68
Zm00001d020512_P001	Maize	cytosol	31.66	31.12
Zm00001d035208_P002	Maize	cytosol	32.13	30.92
Zm00001d023313_P001	Maize	plastid	31.82	30.85
Zm00001d028056_P001	Maize	cytosol	28.53	30.49
Zm00001d019944_P001	Maize	cytosol	27.74	30.46
Zm00001d030864_P001	Maize	cytosol	30.56	30.42
Zm00001d013741_P001	Maize	cytosol	30.25	30.02
Zm00001d003297_P001	Maize	mitochondrion	28.68	29.71
Zm00001d005051_P001	Maize	cytosol	26.18	28.94
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	28.21	28.71
Zm00001d017079_P001	Maize	cytosol	27.9	28.53
Zm00001d013182_P003	Maize	cytosol, mitochondrion	30.56	27.74
Zm00001d023314_P001	Maize	cytosol	25.24	25.24
Zm00001d028075_P010	Maize	endoplasmic reticulum	30.41	24.04

Protein Annotations

EntrezGene:103646846	Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A1D6EFF6	ncoils:Coil	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR027356
InterPro:NPH3-like	InterPro:NPH3_dom	ProteinID:ONM18920.1	PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0004DE8691	EnsemblPlantsGene:Zm00001d004440	EnsemblPlants:Zm00001d004440_P001
EnsemblPlants:Zm00001d004440_T001	SEG:seg	:	:	:	:

Description

Root phototropism protein 3

Coordinates

chr2:+:112115736..112117938

Molecular Weight (calculated)

69840.1 Da

IEP (calculated)

7.724

GRAVY (calculated)

-0.291

Length

638 amino acids

Sequence
(BLAST)

001: MNAWEATERE NHVTERGLVP VSTGDVQVQH EHGGAAKADG FVRRDQSCRY ASSDIPSDLL VKVGGVNFHV HKHPMVSRSG RLARLVDEAS ALHGPVAATV
101: VELPDLPGGH GAFELAAKFC YGVVVDITAA NVAALRCAAE YLEMTEEVEE GNLAFRAEAF LSYVVASSWR DSVVVLRACE GLSPWADDLH LVRRCSESVA
201: AKACTNPRAV RWAYAGRTSS SPNKSPTAGT AGNSQQQPGP PADWWVEDIC VLRIDHFVRV VTAVQARGMR PDLIGAAITR YASKWLSSAG LLANKDSPAS
301: RGGGGGGVLQ MIVASEGDDA QTETEASEQR RIVESLISII PPQKDCLSCS FLLRLLRLAV VLKAAPALVT EVEKHVGMQL DQAKLLDILV PSYPYARSEA
401: AYDVDLVQRL VEQFVVQEQS GRDKEKQEQQ SSRALRMASL MDSYLSEVSR DRNLSLGKFQ ALAESLPESA RVCHDELYRA VDSYLKAHPT VTEHERKRLC
501: RAVDCGKLSR EARLHAAQNE RLPLRVVVQV LLSEQAKMAG ALGRAGKKED DVNALRQEVE SVNAKYMELQ REVELLQRQV ERMLPPSAAA KQHNVSGWSS
601: GWKKLGRLGR IQVEQPVVTA ATGETANRQL RRRRNSAS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.