Factsheet for Zm00001d050959_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017079_P001	Maize	cytosol	88.36	88.78
TraesCS6D01G192300.1	Wheat	cytosol	77.67	77.67
TraesCS6A01G208800.2	Wheat	cytosol	77.67	77.67
TraesCS6B01G237800.1	Wheat	cytosol	77.51	77.64
HORVU6Hr1G053490.2	Barley	cytosol	77.03	77.03
Zm00001d003297_P001	Maize	mitochondrion	63.8	64.94
GSMUA_Achr10P...	Banana	cytosol	47.69	53.11
GSMUA_Achr8P16390_001	Banana	cytosol	41.79	50.19
CDY72257	Canola	cytosol	39.87	49.41
CDY72267	Canola	cytosol	39.87	49.41
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	49.6	49.37
KRH69640	Soybean	cytosol	48.96	48.27
KRH74516	Soybean	cytosol	46.25	47.15
PGSC0003DMT400047866	Potato	cytosol	47.21	47.13
Solyc05g013570.2.1	Tomato	nucleus	45.61	46.89
KRG99441	Soybean	cytosol	47.21	46.84
KRH45579	Soybean	nucleus	47.05	46.53
AT1G67900.2	Thale cress	nucleus	46.57	46.28
Bra004064.1-P	Field mustard	cytosol	46.09	45.95
CDX83620	Canola	cytosol	36.52	41.86
CDY13635	Canola	cytosol	37.96	41.46
Bra025208.1-P	Field mustard	cytosol	37.96	41.46
AT3G26490.3	Thale cress	cytosol	37.96	40.48
Zm00001d033344_P001	Maize	cytosol	37.16	36.69
Zm00001d013741_P001	Maize	cytosol	36.68	35.77
Zm00001d048138_P007	Maize	cytosol	34.13	34.29
Zm00001d030864_P001	Maize	cytosol	34.29	33.54
Zm00001d019944_P001	Maize	cytosol	30.62	33.05
Zm00001d045098_P001	Maize	cytosol	33.49	32.97
Zm00001d005769_P001	Maize	cytosol	31.26	31.36
Zm00001d002146_P001	Maize	cytosol	30.94	31.29
Zm00001d020512_P001	Maize	cytosol	31.74	30.66
Zm00001d043271_P001	Maize	cytosol	30.78	29.83
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	28.87	28.78
Zm00001d004440_P001	Maize	cytosol	28.71	28.21
Zm00001d035208_P002	Maize	cytosol	29.82	28.21
Zm00001d033941_P001	Maize	mitochondrion, plastid	28.23	28.05
Zm00001d028056_P001	Maize	cytosol	26.63	27.97
Zm00001d023313_P001	Maize	plastid	29.03	27.66
Zm00001d028075_P010	Maize	endoplasmic reticulum	34.29	26.64
Zm00001d016898_P001	Maize	cytosol	31.26	26.17
Zm00001d047483_P002	Maize	plastid	26.95	26.12
Zm00001d013182_P003	Maize	cytosol, mitochondrion	28.87	25.75
Zm00001d005051_P001	Maize	cytosol	23.29	25.3
Zm00001d023314_P001	Maize	cytosol	25.2	24.76

Protein Annotations

EnsemblPlants:Zm00001d050959_P001	EnsemblPlants:Zm00001d050959_T001	EnsemblPlantsGene:Zm00001d050959	EntrezGene:103653708	Gene3D:3.30.710.10	InterPro:IPR027356
InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR32370	PANTHER:PTHR32370:SF33	PFAM:PF03000
PFscan:PS51649	ProteinID:AQK53335.1	SEG:seg	SUPFAM:SSF54695	UniParc:UPI0004DE7BFB	UniProt:A0A1D6Q453
MapMan:35.1	:	:	:	:	:

Description

Putative phototropic-resoponsive NPH3 family protein

Coordinates

chr4:+:133502424..133505103

Molecular Weight (calculated)

67340.0 Da

IEP (calculated)

8.019

GRAVY (calculated)

0.033

Length

627 amino acids

Sequence
(BLAST)

001: MKFMKLGTRP DTFFTAGSVR SVCTEVATDL QILVDNCLYH LHKFPLLSKC MLLQALCADA VAGDVVELRG FPGGGEAFEA CARFCYGITV TVSARNLVPL
101: RCAAAHLGMS EATDRGNLAA KLDAFLASCL LRRWKDALGV LHSTRHYAPL CEDLGLTSRC VDAVAALIAS PDTALPSRST SASPWWAHDI AELGVDLFWR
201: IIVAVKATGA IHDRTVGDAL KAYARRWLPN VAKDGHGLSA GQPFDHDAGS AVVKQVTTRH RLLLETIVSL LPAERDAVSC SFLLRLLEAA NILSASKAEL
301: VKRVAWQLEE ASVADLLIPS LSCVSETLYD VDAVSAIIDE FALRCAAVPP ALALSGSPDD SPAHSAGHRR SRSAESVSFD GTRRSLSAAP VSQGALVQVG
401: RLVDGFLIEA AKDPNMPLDK LLAIAEAVPD SARPEHDGMY KVVDTYLKAH PEMSKSARKR LCRVLNCRKL SEKACTHAAQ NELLPLRVVV QVLFFEHARA
501: AALAPGAHAL AAADLPSNIR ALLSKSGSSE DEEAERADEQ RLRALAAGAS PGGDWSVEGL RRAASKIATL RMKLAEDEDR DADEFARKAG VARSASLRFR
601: AFCAFPAGKP KRMLSRLWPL GRNGVSH

Best Arabidopsis Sequence Match ( AT1G67900.4 )
(BLAST)

001: MKFMKLGSRP DTFYTSEDLR CVSSEVSSDF TIEVSGSRYL LHKFPLLSKC LRLQRMCSES PESIIQLPEF PGGVEAFELC AKFCYGITIT ISAYNIVAAR
101: CAAEYLQMSE EVEKGNLVYK LEVFFNSCIL NGWRDSIVTL QTTKAFPLWS EDLAITSRCI EAIASKVLSH PSKVSLSHSH SRRVRDDDMS SNRAAASSRG
201: WWAEDIAELG IDLYWRTMIA IKSGGKVPAS LIGDALRVYA SKWLPTLQRN RKVVKKKEDS DSDSDTDTSS KHRLLLESII SLLPAEKGAV SCSFLLKLLK
301: AANILNASTS SKMELARRVA LQLEEATVSD LLIPPMSYKS ELLYDVDIVA TILEQFMVQG QTSPPTSPLR GKKGMMDRRR RSRSAENIDL EFQESRRSSS
401: ASHSSKLKVA KLVDGYLQQI ARDVNLPLSK FVTLAESVPE FSRLDHDDLY RAIDIYLKAH KNLNKSERKR VCRVLDCKKL SMEACMHAAQ NEMLPLRVVV
501: QVLFYEQARA AAATNNGEKN TTELPSNIKA LLAAHNIDPS NPNAAAFSTT TSIAAPEDRW SVSGLKSPKS KLSGTLRSKL AEDEEVDERF MNGDGGRTPS
601: RFKAFCAIPG RPKKMFSKLL SINRNSSDKN C

Arabidopsis Description

BTB/POZ domain-containing protein At1g67900 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.