Factsheet for Zm00001d023314_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d036091_P001
Zm00001d039362_P002
Zm00001d044479_P001
Zm00001d045420_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT2G30520.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT2G30520.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT2G30520.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT2G30520.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT2G30520.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT2G30520.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT2G30520.1	Zm00001d044479_P001	AT2G42580.1	19000166
AT2G30520.1	Zm00001d036091_P001	AT5G66280.1	21798944
AT2G30520.1	Zm00001d045420_P001	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22914	Sorghum	plastid	80.41	71.85
Zm00001d005051_P001	Maize	cytosol	64.89	71.75
TraesCS4A01G192900.1	Wheat	cytosol	60.34	68.51
TraesCS4D01G120400.1	Wheat	cytosol, plastid	60.66	67.78
TraesCS4B01G122300.1	Wheat	cytosol, plastid	60.5	67.6
Os12t0117400-01	Rice	plasma membrane	60.19	67.37
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	59.72	61.75
HORVU4Hr1G023260.3	Barley	cytosol, plastid	60.5	61.66
KRH30675	Soybean	cytosol	17.55	50.68
GSMUA_Achr11P...	Banana	cytosol, plastid	41.22	45.42
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	42.16	44.83
CDY10743	Canola	cytosol	39.19	43.03
VIT_06s0004g08230.t01	Wine grape	mitochondrion	38.4	42.83
CDY02075	Canola	cytosol	38.87	42.76
Bra018309.1-P	Field mustard	cytosol, plastid	39.34	42.47
KRG98106	Soybean	cytosol	38.09	42.41
CDY23992	Canola	cytosol	37.3	42.12
CDX84827	Canola	cytosol	37.3	42.12
PGSC0003DMT400031245	Potato	cytosol	37.62	41.67
Solyc07g043130.2.1	Tomato	cytosol	37.46	41.49
Bra022805.1-P	Field mustard	cytosol	37.3	41.39
AT2G30520.1	Thale cress	cytosol	38.4	41.32
KRH17211	Soybean	cytosol	37.46	41.28
KRH72843	Soybean	cytosol	37.15	40.86
KRH30676	Soybean	plastid	14.58	32.63
Zm00001d028056_P001	Maize	cytosol	29.62	31.66
Zm00001d047483_P002	Maize	plastid	30.09	29.68
Zm00001d023313_P001	Maize	plastid	28.84	27.96
Zm00001d017079_P001	Maize	cytosol	25.39	25.96
Zm00001d003297_P001	Maize	mitochondrion	24.76	25.65
Zm00001d004440_P001	Maize	cytosol	25.24	25.24
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	24.76	25.2
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	24.45	24.8
Zm00001d002146_P001	Maize	cytosol	23.51	24.19
Zm00001d035208_P002	Maize	cytosol	25.08	24.13
Zm00001d033941_P001	Maize	mitochondrion, plastid	23.51	23.77
Zm00001d013182_P003	Maize	cytosol, mitochondrion	26.18	23.76
Zm00001d048138_P007	Maize	cytosol	22.73	23.24
Zm00001d033344_P001	Maize	cytosol	22.73	22.83
Zm00001d043271_P001	Maize	cytosol	23.04	22.72
Zm00001d030864_P001	Maize	cytosol	22.73	22.62
Zm00001d019944_P001	Maize	cytosol	20.38	22.38
Zm00001d005769_P001	Maize	cytosol	21.79	22.24
Zm00001d013741_P001	Maize	cytosol	22.26	22.08
Zm00001d020512_P001	Maize	cytosol	22.41	22.03
Zm00001d045098_P001	Maize	cytosol	21.16	21.19
Zm00001d016898_P001	Maize	cytosol	24.61	20.96
Zm00001d028075_P010	Maize	endoplasmic reticulum	22.26	17.6

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A1D6IRU5	ProteinID:AQK38949.1	InterPro:BTB/POZ_dom	GO:GO:0003674
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	InterPro:IPR000210
InterPro:IPR027356	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0008446A26	EnsemblPlantsGene:Zm00001d023314
EnsemblPlants:Zm00001d023314_P001	EnsemblPlants:Zm00001d023314_T001	SEG:seg	:	:	:

Description

Putative phototropic-resoponsive NPH3 family protein

Coordinates

chr10:+:2775081..2777402

Molecular Weight (calculated)

67252.6 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.066

Length

638 amino acids

Sequence
(BLAST)

001: MHLSLGCRDP AHCTVAATVS SSTMSAASTV DPHPPHQQQQ CSDKVSSMEM EIPADLIIRI GESVFPLHKA VMVPKCGYIR RAVEAVATRP SSKGGADADA
101: DPPATVELDL SALPGGADAF DKAARYCYGA NFEITPQNAA ALRCAAAFLD MRHASADLAG RVDEFLARAA LRALPGAVAV LRSCEAPGLR AAAEELGVAR
201: RAADAVARGV CAEALSLSYS SASRGPGWWK LELAALSPRS FGKVVTALRC RRAEPAVVAA AAAAYAELVL AEVLAAPQDR ADHRALLESV VDVLPSPADA
301: PGVPAPFLCR LLHAAVAAGA SAKTCRDLEL RVAAVLDQAT AQDLLAVALD ATGERVRNTD IVRRVVVAFV ERQAAVTPAG ERRSRRASMS GTTAATELGA
401: ARPGALEKVA MMVDEVAAEI ATEEALPISK FVGVAGAVPK DARPSHDCLY RAVDIYLKTH PELDEIQREK VCSVMDPLKL SYQARTHASQ NKRLPLQAAL
501: SALYYDELKL RSAATADVVL DTQSSAAGRA CAQARAADAA LARENEALRS ELARMRAYLS GMERSKGGRS TPPSSPSRRA KKASFLGSVS RTMSRLNPFR
601: SGGWMAKVTT SNAAGGGRQS KTMMQHVVTP KRRRASIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.