Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82741 | Sorghum | plastid | 88.56 | 84.88 |
| TraesCS4A01G192900.1 | Wheat | cytosol | 68.46 | 70.28 |
| TraesCS4B01G122300.1 | Wheat | cytosol, plastid | 68.98 | 69.7 |
| TraesCS4D01G120400.1 | Wheat | cytosol, plastid | 68.63 | 69.35 |
| Os12t0117400-01 | Rice | plasma membrane | 66.03 | 66.84 |
| Zm00001d023314_P001 | Maize | cytosol | 71.75 | 64.89 |
| HORVU4Hr1G023260.3 | Barley | cytosol, plastid | 67.94 | 62.62 |
| Os11t0118300-01 | Rice | cytosol, mitochondrion, nucleus | 65.68 | 61.43 |
| KRH30675 | Soybean | cytosol | 20.62 | 53.85 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 49.22 | 49.05 |
| GSMUA_Achr5P29690_001 | Banana | cytosol, plastid | 49.57 | 47.67 |
| VIT_06s0004g08230.t01 | Wine grape | mitochondrion | 45.41 | 45.8 |
| CDY10743 | Canola | cytosol | 45.58 | 45.27 |
| CDX84827 | Canola | cytosol | 44.19 | 45.13 |
| CDY02075 | Canola | cytosol | 45.06 | 44.83 |
| Solyc07g043130.2.1 | Tomato | cytosol | 44.71 | 44.79 |
| KRG98106 | Soybean | cytosol | 44.37 | 44.68 |
| Bra018309.1-P | Field mustard | cytosol, plastid | 45.75 | 44.67 |
| PGSC0003DMT400031245 | Potato | cytosol | 44.54 | 44.62 |
| CDY23992 | Canola | cytosol | 43.67 | 44.6 |
| Bra022805.1-P | Field mustard | cytosol | 44.37 | 44.52 |
| KRH17211 | Soybean | cytosol | 44.02 | 43.87 |
| KRH72843 | Soybean | cytosol | 44.02 | 43.79 |
| AT2G30520.1 | Thale cress | cytosol | 44.71 | 43.51 |
| KRH30676 | Soybean | plastid | 17.5 | 35.44 |
| Zm00001d028056_P001 | Maize | cytosol | 33.28 | 32.16 |
| Zm00001d047483_P002 | Maize | plastid | 33.62 | 29.98 |
| Zm00001d023313_P001 | Maize | plastid | 31.72 | 27.81 |
| Zm00001d004440_P001 | Maize | cytosol | 28.94 | 26.18 |
| Zm00001d013182_P003 | Maize | cytosol, mitochondrion | 31.2 | 25.6 |
| Zm00001d002146_P001 | Maize | cytosol | 27.21 | 25.32 |
| Zm00001d033240_P002 | Maize | cytosol, mitochondrion, nucleus | 27.38 | 25.12 |
| Zm00001d033941_P001 | Maize | mitochondrion, plastid | 27.38 | 25.04 |
| Zm00001d003297_P001 | Maize | mitochondrion | 26.17 | 24.51 |
| Zm00001d033344_P001 | Maize | cytosol | 26.69 | 24.25 |
| Zm00001d017079_P001 | Maize | cytosol | 26.0 | 24.04 |
| Zm00001d030864_P001 | Maize | cytosol | 26.52 | 23.87 |
| Zm00001d043271_P001 | Maize | cytosol | 26.69 | 23.8 |
| Zm00001d035208_P002 | Maize | cytosol | 27.04 | 23.53 |
| Zm00001d013741_P001 | Maize | cytosol | 26.17 | 23.48 |
| Zm00001d050959_P001 | Maize | cytosol, mitochondrion, plastid | 25.3 | 23.29 |
| Zm00001d005769_P001 | Maize | cytosol | 24.96 | 23.04 |
| Zm00001d045098_P001 | Maize | cytosol | 25.3 | 22.92 |
| Zm00001d048138_P007 | Maize | cytosol | 24.78 | 22.92 |
| Zm00001d020512_P001 | Maize | cytosol | 25.13 | 22.34 |
| Zm00001d016898_P001 | Maize | cytosol | 28.42 | 21.9 |
| Zm00001d019944_P001 | Maize | cytosol | 21.14 | 21.0 |
| Zm00001d028075_P010 | Maize | endoplasmic reticulum | 24.09 | 17.22 |
Protein Annotations
| EntrezGene:103647148 | Gene3D:3.30.710.10 | MapMan:35.1 | UniProt:A0A1D6EIX6 | GO:GO:0003674 | GO:GO:0004871 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009638 | GO:GO:0009987 | InterPro:IPR027356 | InterPro:NPH3_dom | ProteinID:ONM20056.1 | PFAM:PF03000 |
| PFscan:PS51649 | PANTHER:PTHR32370 | PANTHER:PTHR32370:SF17 | InterPro:RPT2 | InterPro:SKP1/BTB/POZ_sf | SUPFAM:SSF54695 |
| UniParc:UPI000221C5BC | EnsemblPlantsGene:Zm00001d005051 | EnsemblPlants:Zm00001d005051_P001 | EnsemblPlants:Zm00001d005051_T001 | SEG:seg | : |
Description
Root phototropism protein 2
Coordinates
chr2:+:156270103..156272641
Molecular Weight (calculated)
60607.4 Da
IEP (calculated)
9.028
GRAVY (calculated)
-0.063
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASSSMDR IAQWVSSQEV PTDLTVRIAD SVFSLHKAVM VPKCGYIRRA VAASQTQGPG GGAVELDLSA LPGGADAFQK AARCCYGDSL EITARDAAAL
101: RCAAEFLDAP DLARRADDFL AQAALRALPG AAAVLRSCEA LLPAADELGV ARRAADAVAL GVCNEALFPT PRAPPGWWAA ELAALSPASF RRVVAALRCR
201: RAGPEVVAAA AAAYAERVLA GVLAAPGRRD ADQRALLEAV VDALPPAADA PLPAAFLCRL LRAAVTAEAS AKTCRDMELR VAAVLDQATA GDLLGVALDG
301: AGERVVNADT VRRVVAACVE RQQTQQGRRA SLAGGPAGEL SALEKVAKTV DEVAAEMASH ESLPISKFVG VAGAVPRDAR PSHDCLYRAV DIYLKTHPGL
401: DEIEREKVCS VMDPLRLSYQ ARMHASQNKR LPLQAVLSVL YYDQLKIRSA DGSGGTEEGW ETQSAAGKAR AQARADVSLA RENEALRLEL ARMRAYVSGM
501: QQSSKGSGSR PSSSSLVPGP ATATGKKASF LGSVSRTLSR LNPFKGGWAK DTTSIADGRD RTSMHVVKPK RRRFSIG
101: RCAAEFLDAP DLARRADDFL AQAALRALPG AAAVLRSCEA LLPAADELGV ARRAADAVAL GVCNEALFPT PRAPPGWWAA ELAALSPASF RRVVAALRCR
201: RAGPEVVAAA AAAYAERVLA GVLAAPGRRD ADQRALLEAV VDALPPAADA PLPAAFLCRL LRAAVTAEAS AKTCRDMELR VAAVLDQATA GDLLGVALDG
301: AGERVVNADT VRRVVAACVE RQQTQQGRRA SLAGGPAGEL SALEKVAKTV DEVAAEMASH ESLPISKFVG VAGAVPRDAR PSHDCLYRAV DIYLKTHPGL
401: DEIEREKVCS VMDPLRLSYQ ARMHASQNKR LPLQAVLSVL YYDQLKIRSA DGSGGTEEGW ETQSAAGKAR AQARADVSLA RENEALRLEL ARMRAYVSGM
501: QQSSKGSGSR PSSSSLVPGP ATATGKKASF LGSVSRTLSR LNPFKGGWAK DTTSIADGRD RTSMHVVKPK RRRFSIG
001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
Arabidopsis Description
RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.