CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87803
EER89154
EES01073
EES02247
EES03228
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	EES01073	AT2G42580.1	19000166
AT2G30520.1	EES02247	AT2G42580.1	19000166
AT2G30520.1	OQU78515	AT2G42580.1	19000166
AT2G30520.1	EER87803	AT5G66280.1	21798944
AT2G30520.1	EER89154	AT5G66280.1	21798944
AT2G30520.1	EES03228	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005051_P001	Maize	cytosol	84.88	88.56
TraesCS4A01G192900.1	Wheat	cytosol	66.45	71.17
TraesCS4D01G120400.1	Wheat	cytosol, plastid	67.11	70.75
TraesCS4B01G122300.1	Wheat	cytosol, plastid	67.11	70.75
Os12t0117400-01	Rice	plasma membrane	65.61	69.3
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	65.12	63.53
HORVU4Hr1G023260.3	Barley	cytosol, plastid	65.95	63.42
KXG22914	Sorghum	plastid	70.27	59.24
KRH30675	Soybean	cytosol	20.1	54.75
GSMUA_Achr11P...	Banana	cytosol, plastid	46.01	47.84
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	47.18	47.33
VIT_06s0004g08230.t01	Wine grape	mitochondrion	42.86	45.1
CDY10743	Canola	cytosol	42.86	44.41
CDY02075	Canola	cytosol	42.69	44.31
Bra018309.1-P	Field mustard	cytosol, plastid	43.02	43.82
Solyc07g043130.2.1	Tomato	cytosol	41.69	43.58
PGSC0003DMT400031245	Potato	cytosol	41.53	43.4
CDX84827	Canola	cytosol	40.7	43.36
KRG98106	Soybean	cytosol	41.2	43.28
KRH17211	Soybean	cytosol	41.53	43.18
CDY23992	Canola	cytosol	40.37	43.01
Bra022805.1-P	Field mustard	cytosol	40.86	42.78
KRH72843	Soybean	cytosol	41.2	42.76
AT2G30520.1	Thale cress	cytosol	42.03	42.66
KRH30676	Soybean	plastid	15.28	32.28
KXG39906	Sorghum	cytosol	30.56	29.92
OQU92601	Sorghum	plastid	32.39	29.5
EES16593	Sorghum	plastid	28.07	26.24
OQU91026	Sorghum	cytosol, nucleus, plastid	25.58	25.75
EER93390	Sorghum	cytosol	28.07	25.0
KXG25806	Sorghum	cytosol	27.08	24.92
EES11510	Sorghum	cytosol	25.42	24.06
EES14497	Sorghum	cytosol	26.08	23.86
EER91175	Sorghum	cytosol	24.58	23.45
OQU93039	Sorghum	cytosol	23.59	23.32
EES03716	Sorghum	cytosol	24.92	23.04
EER98911	Sorghum	cytosol	23.42	22.78
EER91236	Sorghum	cytosol	23.75	22.59
EES05363	Sorghum	cytosol, nucleus, plastid	23.75	22.24
OQU79444	Sorghum	cytosol	23.59	22.05
EER89339	Sorghum	cytosol	23.26	22.05
EES10995	Sorghum	mitochondrion	23.92	22.02
EES07014	Sorghum	nucleus	26.41	20.57
KXG35200	Sorghum	cytosol	18.77	19.55

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A1Z5RGU5	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	InterPro:IPR000210	InterPro:IPR027356
InterPro:NPH3_dom	EnsemblPlants:OQU82741	ProteinID:OQU82741	ProteinID:OQU82741.1	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	EnsemblPlantsGene:SORBI_3005G015200
SUPFAM:SSF54695	UniParc:UPI000B8B9A16	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1366396..1368530

Molecular Weight (calculated)

62803.0 Da

IEP (calculated)

9.236

GRAVY (calculated)

-0.029

Length

602 amino acids

Sequence
(BLAST)

001: MAASSMDRIT QWVSSQVQQV SADLTVRIAD SVFPLHKAVM VPKCGYIRRA VAAAAAVATS QTQGPGPASV ELDLSALPGG ADAFEKAARY CYGGSLEITA
101: RDAAAVRCAA AFLDAPDLAR RAEDYLAQTA LRSLPGAAAV LRSCECEALL RAAEETGVAR RAADAVALGV CNEALFPTAR AAPGWWVAEL AALSPASFRK
201: VVTALRCRRA GPEVVAAAAV AYAERVLAGV LAPAAPGRRD AVVVVARNAD ADADRRALLE AVVDALPPAA DAPLPAAFLC RLLHAVVTAE ASAKTCRDME
301: LRVAGVLHQA TAGDLLGVAL DGAGERVRNA DTVRRVVAAF VERPQTQEGR RASLAGGPAA GELGALEKVA KTVDEVAAEM ATEESLGISK FVGVAGAVPK
401: DARASHDCLY RAVDMYLKTH PGLDEIEREK VCSVMDPLRL SYQARLHASQ NKRLPLQAVL SALYYDQLKL RSADGGGGDG AEGGAGWEPQ SAAGKARAQA
501: RADASLAREN EALRSELARM RAYVSGMQQH SKGSGSRSSS ASLVPASAAG KKASFLGSVS RTLSRLNPFK GGWAKDTASI ADGRDRSAMH VVKPKRRRFS
601: IG

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.