Factsheet for AT2G30520.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018309.1-P	Field mustard	cytosol, plastid	89.88	90.19
CDY10743	Canola	cytosol	88.2	90.02
CDY02075	Canola	cytosol	87.69	89.66
Bra022805.1-P	Field mustard	cytosol	83.98	86.61
CDX84827	Canola	cytosol	82.29	86.37
CDY23992	Canola	cytosol	81.79	85.84
VIT_06s0004g08230.t01	Wine grape	mitochondrion	70.49	73.08
PGSC0003DMT400031245	Potato	cytosol	69.65	71.7
Solyc07g043130.2.1	Tomato	cytosol	69.48	71.53
KRH30675	Soybean	cytosol	26.31	70.59
KRG98106	Soybean	cytosol	66.1	68.41
KRH72843	Soybean	cytosol	64.76	66.21
KRH17211	Soybean	cytosol	64.59	66.15
KRH30676	Soybean	plastid	29.17	60.7
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	52.61	52.0
GSMUA_Achr11P...	Banana	cytosol, plastid	50.59	51.81
TraesCS4B01G122300.1	Wheat	cytosol, plastid	45.53	47.29
TraesCS4D01G120400.1	Wheat	cytosol, plastid	45.53	47.29
TraesCS4A01G192900.1	Wheat	cytosol	44.01	46.44
Zm00001d005051_P001	Maize	cytosol	43.51	44.71
Os12t0117400-01	Rice	plasma membrane	42.83	44.56
HORVU4Hr1G023260.3	Barley	cytosol, plastid	45.19	42.81
OQU82741	Sorghum	plastid	42.66	42.03
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	42.83	41.17
AT5G67385.1	Thale cress	cytosol	40.3	39.57
Zm00001d023314_P001	Maize	cytosol	41.32	38.4
AT3G49970.2	Thale cress	extracellular	33.05	38.06
AT5G48800.1	Thale cress	cytosol	36.76	35.5
KXG22914	Sorghum	plastid	42.16	35.01
AT3G08660.1	Thale cress	plastid	32.55	33.16
AT1G03010.1	Thale cress	cytosol	35.41	33.12
AT3G08570.1	Thale cress	plastid	34.06	32.74
AT2G47860.3	Thale cress	plastid	35.75	32.22
AT5G13600.1	Thale cress	cytosol	30.52	30.63
AT3G50840.1	Thale cress	cytosol	28.84	30.05
AT5G03250.1	Thale cress	cytosol	29.85	29.9
AT5G67440.1	Thale cress	cytosol	28.84	29.53
AT2G23050.1	Thale cress	cytosol	23.95	29.52
AT4G31820.1	Thale cress	cytosol	27.99	29.07
AT1G30440.1	Thale cress	cytosol, mitochondrion, nucleus	32.38	28.87
AT5G66560.1	Thale cress	cytosol	31.53	27.99
AT4G37590.1	Thale cress	cytosol	27.15	27.76
AT5G64330.1	Thale cress	cytosol	34.4	27.35
AT2G14820.2	Thale cress	cytosol	28.67	26.81
AT1G67900.2	Thale cress	nucleus	28.33	26.62
AT5G10250.2	Thale cress	cytosol	27.66	26.37
AT3G44820.1	Thale cress	cytosol	27.32	24.88
AT3G26490.3	Thale cress	cytosol	23.61	23.81
AT5G47800.2	Thale cress	cytosol	25.46	22.47

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	EntrezGene:817601	ProteinID:AAB63085.1	ProteinID:AAB63086.1	ProteinID:AEC08401.1
ProteinID:AEC08402.1	ProteinID:AEC08403.1	EMBL:AF181683	EMBL:AK175297	EMBL:AK221310	EMBL:AK221993
EMBL:AK222218	EMBL:AK229759	EMBL:AK229844	EMBL:AK230435	ArrayExpress:AT2G30520	EnsemblPlantsGene:AT2G30520
RefSeq:AT2G30520	TAIR:AT2G30520	RefSeq:AT2G30520-TAIR-G	EnsemblPlants:AT2G30520.1	TAIR:AT2G30520.1	EMBL:AY035063
EMBL:AY056359	Unigene:At.24430	EMBL:BT000675	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	RefSeq:NP_001031446.1	RefSeq:NP_001077982.1
RefSeq:NP_850147.1	PFAM:PF00651	PFAM:PF03000	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF17	UniProt:Q682S0	InterPro:RPT2	Symbol:RPT2	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SUPFAM:SSF54695	UniParc:UPI00000AC63A	SEG:seg	:	:	:

Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]

Coordinates

chr2:-:13002727..13005746

Molecular Weight (calculated)

65857.8 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.225

Length

593 amino acids

Sequence
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.