Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029894.1-P | Field mustard | plastid | 85.11 | 86.69 |
| CDY52208 | Canola | plastid | 84.95 | 86.53 |
| CDX83030 | Canola | plastid | 69.6 | 85.61 |
| Solyc09g074630.2.1 | Tomato | cytosol | 51.67 | 66.54 |
| VIT_07s0104g01440.t01 | Wine grape | plastid | 63.37 | 66.09 |
| PGSC0003DMT400029528 | Potato | cytosol | 51.06 | 66.01 |
| KRG96392 | Soybean | plastid | 61.7 | 64.65 |
| KRH71541 | Soybean | plastid | 61.55 | 64.29 |
| KRH68133 | Soybean | cytosol, plastid | 61.4 | 64.23 |
| KRH31912 | Soybean | cytosol | 61.09 | 64.01 |
| AT1G03010.1 | Thale cress | cytosol | 59.57 | 61.83 |
| GSMUA_Achr8P30170_001 | Banana | plastid | 50.91 | 60.04 |
| GSMUA_Achr1P11260_001 | Banana | plastid | 51.82 | 59.51 |
| Zm00001d047483_P002 | Maize | plastid | 54.56 | 55.49 |
| OQU92601 | Sorghum | plastid | 55.17 | 54.92 |
| TraesCS5D01G463700.1 | Wheat | plastid | 54.41 | 54.82 |
| HORVU1Hr1G055870.1 | Barley | plastid | 55.02 | 54.44 |
| TraesCS7A01G184200.2 | Wheat | plastid | 55.17 | 54.34 |
| Os03t0347700-01 | Rice | mitochondrion, plastid | 54.86 | 53.8 |
| TraesCS5B01G461900.4 | Wheat | plastid | 52.13 | 52.21 |
| AT5G48800.1 | Thale cress | cytosol | 39.36 | 42.18 |
| AT3G08570.1 | Thale cress | plastid | 38.75 | 41.33 |
| AT3G08660.1 | Thale cress | plastid | 35.71 | 40.38 |
| AT5G67385.1 | Thale cress | cytosol | 36.78 | 40.07 |
| AT3G49970.2 | Thale cress | extracellular | 28.42 | 36.31 |
| AT2G30520.1 | Thale cress | cytosol | 32.22 | 35.75 |
| AT5G13600.1 | Thale cress | cytosol | 29.79 | 33.16 |
| AT2G23050.1 | Thale cress | cytosol | 23.86 | 32.64 |
| AT5G03250.1 | Thale cress | cytosol | 29.33 | 32.6 |
| AT4G31820.1 | Thale cress | cytosol | 27.05 | 31.17 |
| AT3G50840.1 | Thale cress | cytosol | 26.9 | 31.11 |
| AT4G37590.1 | Thale cress | cytosol | 27.2 | 30.86 |
| AT1G30440.1 | Thale cress | cytosol, mitochondrion, nucleus | 30.7 | 30.38 |
| AT3G26490.3 | Thale cress | cytosol | 25.99 | 29.08 |
| AT5G67440.1 | Thale cress | cytosol | 25.53 | 29.02 |
| AT5G10250.2 | Thale cress | cytosol | 27.36 | 28.94 |
| AT1G67900.2 | Thale cress | nucleus | 27.66 | 28.84 |
| AT5G64330.1 | Thale cress | cytosol | 32.22 | 28.42 |
| AT5G66560.1 | Thale cress | cytosol | 28.72 | 28.29 |
| AT2G14820.2 | Thale cress | cytosol | 27.2 | 28.23 |
| AT3G44820.1 | Thale cress | cytosol | 25.68 | 25.96 |
| AT5G47800.2 | Thale cress | cytosol | 21.88 | 21.43 |
Protein Annotations
| MapMan:35.1 | EntrezGene:819398 | ProteinID:AEC10901.1 | ProteinID:AEC10902.1 | ProteinID:ANM62374.1 | ProteinID:ANM62375.1 |
| ArrayExpress:AT2G47860 | EnsemblPlantsGene:AT2G47860 | RefSeq:AT2G47860 | TAIR:AT2G47860 | RefSeq:AT2G47860-TAIR-G | EnsemblPlants:AT2G47860.3 |
| TAIR:AT2G47860.3 | ncoils:Coil | UniProt:F4IM54 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:IPR027356 | InterPro:NPH3_dom | RefSeq:NP_001189774.1 | RefSeq:NP_001324535.1 | RefSeq:NP_001324536.1 |
| RefSeq:NP_973711.1 | PFAM:PF03000 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 |
| PO:PO:0020100 | PFscan:PS51649 | PANTHER:PTHR32370 | PANTHER:PTHR32370:SF30 | InterPro:SKP1/BTB/POZ_sf | SUPFAM:SSF54695 |
| UniParc:UPI0001E92D06 | SEG:seg | : | : | : | : |
Description
Phototropic-responsive NPH3 family protein [Source:UniProtKB/TrEMBL;Acc:F4IM54]
Coordinates
chr2:+:19599948..19602272
Molecular Weight (calculated)
73850.7 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.340
Length
658 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKVTKFNK LRRKKRNCFT QTRSLLQFPL VSRSGRIRKL VLESKDTNLN
101: LAAVPGGSES FELAAKFCYG VGVQYNSSNI AALRCVAHYL EMTEDLSEKN LEARTEAYLK DSIFNDISNS ITVLHSCERL LPVAEEINLV GRLVNAIAVN
201: ACKEQLASGL LKLDQSFSCG VPETAKPCDW WGRSLPILKL DFFQRVLSAM KSKGLNHDII SDILMSYARK SLQIIREPNL VKSDSDLQRK QRIVLEAVVG
301: LLPTQANKSS IPISFLSSLL KTAIGSGTSV SCRSDLERRI SHLLDQAILE DILIPANIGA MYDTDSVQRI FSMFLNLDEC EYRDDDDDEE DAVDESEMAM
401: YDFEGAESPK QSSIFKVSKL MDSYLAEVAL DSSLPPSKFI ALAELLPDHA RVVCDGLYRA VDIFLKVHPH MKDSERYRLC KTVSCKKLSQ DASSHAAQNE
501: RLPVQIAVQV LFYEQTRLKN AMTSGGGTGG SNQSQFFLFP NRSGSGMASG AISPRDNYAS VRRENRELRL EVARMRMRLT DLEKDHVSMK RDFVKPQSRR
601: RRYGMLRKLS RGLNKLNAIV LRFRSSQSVA SSGKKHTEEK TNSERRFMFQ KRRCHSVS
101: LAAVPGGSES FELAAKFCYG VGVQYNSSNI AALRCVAHYL EMTEDLSEKN LEARTEAYLK DSIFNDISNS ITVLHSCERL LPVAEEINLV GRLVNAIAVN
201: ACKEQLASGL LKLDQSFSCG VPETAKPCDW WGRSLPILKL DFFQRVLSAM KSKGLNHDII SDILMSYARK SLQIIREPNL VKSDSDLQRK QRIVLEAVVG
301: LLPTQANKSS IPISFLSSLL KTAIGSGTSV SCRSDLERRI SHLLDQAILE DILIPANIGA MYDTDSVQRI FSMFLNLDEC EYRDDDDDEE DAVDESEMAM
401: YDFEGAESPK QSSIFKVSKL MDSYLAEVAL DSSLPPSKFI ALAELLPDHA RVVCDGLYRA VDIFLKVHPH MKDSERYRLC KTVSCKKLSQ DASSHAAQNE
501: RLPVQIAVQV LFYEQTRLKN AMTSGGGTGG SNQSQFFLFP NRSGSGMASG AISPRDNYAS VRRENRELRL EVARMRMRLT DLEKDHVSMK RDFVKPQSRR
601: RRYGMLRKLS RGLNKLNAIV LRFRSSQSVA SSGKKHTEEK TNSERRFMFQ KRRCHSVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.