CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83030	Canola	plastid	81.27	98.13
AT2G47860.3	Thale cress	plastid	86.53	84.95
VIT_07s0104g01440.t01	Wine grape	plastid	65.33	66.88
Solyc09g074630.2.1	Tomato	cytosol	52.17	65.95
PGSC0003DMT400029528	Potato	cytosol	51.7	65.62
KRH71541	Soybean	plastid	63.78	65.4
KRH31912	Soybean	cytosol	63.16	64.97
KRG96392	Soybean	plastid	63.16	64.97
KRH68133	Soybean	cytosol, plastid	63.16	64.86
CDX89922	Canola	cytosol	60.06	61.59
CDY18140	Canola	cytosol	59.91	61.43
GSMUA_Achr8P30170_001	Banana	plastid	52.94	61.29
GSMUA_Achr1P11260_001	Banana	plastid	53.72	60.56
CDY32492	Canola	cytosol	59.29	60.03
CDY37449	Canola	cytosol	42.88	57.0
Zm00001d047483_P002	Maize	plastid	56.04	55.95
TraesCS5D01G463700.1	Wheat	plastid	55.88	55.28
OQU92601	Sorghum	plastid	56.5	55.22
HORVU1Hr1G055870.1	Barley	plastid	56.35	54.74
TraesCS7A01G184200.2	Wheat	plastid	56.5	54.64
Os03t0347700-01	Rice	mitochondrion, plastid	55.73	53.65
TraesCS5B01G461900.4	Wheat	plastid	53.56	52.66
CDY68489	Canola	cytosol, plastid	31.11	44.77
CDX86278	Canola	cytosol	40.4	42.1
CDX85365	Canola	cytosol	40.4	42.1
CDX73937	Canola	plastid	37.77	41.78
CDY09561	Canola	cytosol	39.01	41.72
CDY02305	Canola	cytosol	39.01	41.52
CDY00659	Canola	plastid	37.46	41.37
CDY12841	Canola	cytosol	38.54	41.29
CDY37857	Canola	cytosol	38.24	41.17
CDY57436	Canola	cytosol	38.39	41.13
CDY30615	Canola	cytosol	29.26	37.88
CDY57361	Canola	cytosol	29.1	37.68
CDX84827	Canola	cytosol	31.73	36.28
CDY23992	Canola	cytosol	31.58	36.11
CDY10743	Canola	cytosol	32.35	35.97
CDY10395	Canola	cytosol	30.03	35.73
CDY02075	Canola	cytosol	32.04	35.69
CDX70320	Canola	cytosol	30.5	34.44
CDY72267	Canola	cytosol	26.78	34.19
CDY72257	Canola	cytosol	26.78	34.19
CDX85639	Canola	cytosol	30.19	34.09
CDX80858	Canola	cytosol	30.96	34.01
CDY11245	Canola	cytosol	31.11	33.61
CDX73781	Canola	cytosol	28.02	33.21
CDY72506	Canola	cytosol	6.5	33.07
CDX89539	Canola	cytosol	24.3	32.78
CDX77951	Canola	cytosol	27.71	32.66
CDY27653	Canola	cytosol	30.96	32.36
CDY38923	Canola	cytosol	23.68	32.14
CDX69627	Canola	cytosol	30.19	32.13
CDY09812	Canola	cytosol	29.88	31.74
CDX90249	Canola	cytosol, mitochondrion, nucleus	30.8	31.54
CDX99692	Canola	cytosol, mitochondrion, nucleus	31.27	31.32
CDY45241	Canola	cytosol	28.95	31.27
CDY12846	Canola	cytosol	27.09	30.97
CDY09586	Canola	cytosol	31.42	30.95
CDX83620	Canola	cytosol	26.16	30.9
CDX81462	Canola	cytosol	28.79	30.85
CDY37223	Canola	cytosol	28.64	30.68
CDY02293	Canola	cytosol, mitochondrion, nucleus	31.27	30.65
CDY69095	Canola	cytosol	26.47	30.48
CDY44035	Canola	cytosol	26.93	30.26
CDX81314	Canola	cytosol	24.61	30.23
CDY13635	Canola	cytosol	26.63	29.97
CDX72639	Canola	cytosol	26.78	29.93
CDY29566	Canola	cytosol	26.78	29.93
CDY18660	Canola	cytosol	24.46	29.92
CDY18715	Canola	cytosol	33.28	29.7
CDY30765	Canola	cytosol	28.95	29.5
CDY50369	Canola	cytosol	23.37	29.43
CDX84515	Canola	cytosol	32.97	29.34
CDX81221	Canola	cytosol	33.13	29.32
CDX68790	Canola	cytosol	25.85	29.2
CDY22422	Canola	cytosol	25.85	29.04
CDX75198	Canola	cytosol	25.85	28.94
CDX96986	Canola	cytosol	27.55	28.43
CDX69851	Canola	cytosol	27.71	28.41
CDY29723	Canola	cytosol	27.55	25.54
CDY20341	Canola	cytosol	27.86	25.35
CDX77798	Canola	cytosol	21.67	24.96
CDY17704	Canola	cytosol	21.67	24.96
CDY12056	Canola	plasma membrane	31.11	12.45

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A078IT36	InterPro:BTB/POZ_dom	EnsemblPlants:CDY52208	ProteinID:CDY52208
ProteinID:CDY52208.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00005158001
InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF30	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniPathway:UPA00143
UniParc:UPI0004EC3BEF	SEG:seg	:	:	:	:

Description

BnaC01g42530DBnaC01g42530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT36]

Coordinates

chrLK033066:+:54698..58115

Molecular Weight (calculated)

72267.0 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.269

Length

646 amino acids

Sequence
(BLAST)

001: MGVVTVPESK QSVSGKKAFR PSSSIRHTPQ WPVSDVTSDL TIEVGSASFS LHKFPLVSRS GRIRKLLLES KDTKNTYHLN LPGVPGGSEA FELAAKFCYG
101: VVLQFTSANI ASLRCVAHYL EMTEELSEKN LEVRTEAYLK DSIFNDISNS ITVLHSIEKL LPVAEEISLV GRLVNAIAVN ACKEQLVSGL LKLDQKFERL
201: APETEKPSDW WGRSLLILKL DFFQRVVSAM KSKGLNHEII SDILMSYARK SLQIIREPSL VKGSVVLDSD PQNKQRIVLE VIVGLLPTQA NKNSIPVSFL
301: SILLKTAIGS GTSVSCRSDL ERRISHQLDQ AILEDILIPA NVGGAMYDTD SVQRIFSMFL NLDECDYEDD DDGDVVDESE MAMYDFEGPE SPKQSSIFKV
401: SKLMDSYLAE VALDSNLPPL KFIALAELLP DHARVVCDSL YRAIDIFLKV HPNMKDSERY RLCKTISCQK LSQDASSHAA QNERLPIQIA VQVLFYEQTR
501: LKSTMTSGGG GSGACGSSQS QFFLFPGQFP NRSGSGMASG AISPRDNYAS VRRENRELRL EVARMRMRLT DLEKDHVSMK REFVKPSRRT RYGLFRKLSR
601: GLNKLNAIML KFRRSQSVAG NGKHTEEKTN SEKRFMFQKR RCHSVS

Best Arabidopsis Sequence Match ( AT2G47860.1 )
(BLAST)

001: MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKFPLVSR SGRIRKLVLE SKDTNLNLAA VPGGSESFEL AAKFCYGVGV
101: QYNSSNIAAL RCVAHYLEMT EDLSEKNLEA RTEAYLKDSI FNDISNSITV LHSCERLLPV AEEINLVGRL VNAIAVNACK EQLASGLLKL DQSFSCGVPE
201: TAKPCDWWGR SLPILKLDFF QRVLSAMKSK GLNHDIISDI LMSYARKSLQ IIREPNLVKS DSDLQRKQRI VLEAVVGLLP TQANKSSIPI SFLSSLLKTA
301: IGSGTSVSCR SDLERRISHL LDQAILEDIL IPANIGAMYD TDSVQRIFSM FLNLDECEYR DDDDDEEDAV DESEMAMYDF EGAESPKQSS IFKVSKLMDS
401: YLAEVALDSS LPPSKFIALA ELLPDHARVV CDGLYRAVDI FLKVHPHMKD SERYRLCKTV SCKKLSQDAS SHAAQNERLP VQIAVQVLFY EQTRLKNAMT
501: SGGGTGGSNQ SQFFLFPNRS GSGMASGAIS PRDNYASVRR ENRELRLEVA RMRMRLTDLE KDHVSMKRDF VKPQSRRRRY GMLRKLSRGL NKLNAIVLRF
601: RSSQSVASSG KKHTEEKTNS ERRFMFQKRR CHSVS

Arabidopsis Description

Phototropic-responsive NPH3 family protein [Source:UniProtKB/TrEMBL;Acc:F4IM54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.