Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84827 | Canola | cytosol | 97.35 | 97.35 |
| CDY10743 | Canola | cytosol | 89.03 | 86.57 |
| CDY02075 | Canola | cytosol | 88.85 | 86.55 |
| AT2G30520.1 | Thale cress | cytosol | 85.84 | 81.79 |
| VIT_06s0004g08230.t01 | Wine grape | mitochondrion | 69.73 | 68.88 |
| PGSC0003DMT400031245 | Potato | cytosol | 68.5 | 67.19 |
| Solyc07g043130.2.1 | Tomato | cytosol | 67.79 | 66.49 |
| KRH30675 | Soybean | cytosol | 24.96 | 63.8 |
| KRG98106 | Soybean | cytosol | 64.42 | 63.53 |
| KRH72843 | Soybean | cytosol | 62.48 | 60.86 |
| KRH17211 | Soybean | cytosol | 61.77 | 60.28 |
| KRH30676 | Soybean | plastid | 28.67 | 56.84 |
| GSMUA_Achr5P29690_001 | Banana | cytosol, plastid | 53.81 | 50.67 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 51.86 | 50.6 |
| TraesCS4B01G122300.1 | Wheat | cytosol, plastid | 45.49 | 45.01 |
| TraesCS4D01G120400.1 | Wheat | cytosol, plastid | 45.49 | 45.01 |
| TraesCS4A01G192900.1 | Wheat | cytosol | 44.25 | 44.48 |
| Zm00001d005051_P001 | Maize | cytosol | 44.6 | 43.67 |
| Os12t0117400-01 | Rice | plasma membrane | 43.19 | 42.81 |
| HORVU4Hr1G023260.3 | Barley | cytosol, plastid | 45.13 | 40.73 |
| OQU82741 | Sorghum | plastid | 43.01 | 40.37 |
| Os11t0118300-01 | Rice | cytosol, mitochondrion, nucleus | 43.19 | 39.55 |
| CDY68489 | Canola | cytosol, plastid | 31.33 | 39.42 |
| CDY37857 | Canola | cytosol | 40.0 | 37.67 |
| CDY57436 | Canola | cytosol | 39.82 | 37.31 |
| Zm00001d023314_P001 | Maize | cytosol | 42.12 | 37.3 |
| CDY12841 | Canola | cytosol | 39.29 | 36.82 |
| CDY30615 | Canola | cytosol | 31.68 | 35.87 |
| CDY57361 | Canola | cytosol | 31.33 | 35.47 |
| CDX86278 | Canola | cytosol | 37.88 | 34.52 |
| CDX85365 | Canola | cytosol | 37.88 | 34.52 |
| KXG22914 | Sorghum | plastid | 43.01 | 34.03 |
| CDX89922 | Canola | cytosol | 36.46 | 32.7 |
| CDY18140 | Canola | cytosol | 36.28 | 32.54 |
| CDY37449 | Canola | cytosol | 27.96 | 32.51 |
| CDY00659 | Canola | plastid | 33.63 | 32.48 |
| CDY09561 | Canola | cytosol | 34.51 | 32.28 |
| CDY32492 | Canola | cytosol | 36.11 | 31.97 |
| CDX73937 | Canola | plastid | 32.92 | 31.85 |
| CDY02305 | Canola | cytosol | 34.16 | 31.8 |
| CDX73781 | Canola | cytosol | 30.62 | 31.74 |
| CDY52208 | Canola | plastid | 36.11 | 31.58 |
| CDX89539 | Canola | cytosol | 26.73 | 31.52 |
| CDX77951 | Canola | cytosol | 30.09 | 31.02 |
| CDY72267 | Canola | cytosol | 27.43 | 30.63 |
| CDY38923 | Canola | cytosol | 25.66 | 30.46 |
| CDY72257 | Canola | cytosol | 27.26 | 30.43 |
| CDX70320 | Canola | cytosol | 30.8 | 30.42 |
| CDY10395 | Canola | cytosol | 29.2 | 30.39 |
| CDX83030 | Canola | plastid | 28.67 | 30.28 |
| CDX85639 | Canola | cytosol | 30.44 | 30.07 |
| CDY45241 | Canola | cytosol | 31.5 | 29.77 |
| CDX80858 | Canola | cytosol | 30.97 | 29.76 |
| CDY12846 | Canola | cytosol | 29.56 | 29.56 |
| CDY69095 | Canola | cytosol | 29.2 | 29.41 |
| CDX81314 | Canola | cytosol | 27.26 | 29.28 |
| CDY11245 | Canola | cytosol | 30.97 | 29.26 |
| CDY27653 | Canola | cytosol | 31.86 | 29.13 |
| CDX69627 | Canola | cytosol | 31.15 | 29.0 |
| CDY18660 | Canola | cytosol | 27.08 | 28.98 |
| CDX90249 | Canola | cytosol, mitochondrion, nucleus | 31.86 | 28.53 |
| CDY30765 | Canola | cytosol | 31.68 | 28.23 |
| CDX68790 | Canola | cytosol | 28.32 | 27.97 |
| CDY09812 | Canola | cytosol | 30.09 | 27.96 |
| CDX75198 | Canola | cytosol | 28.32 | 27.73 |
| CDX99692 | Canola | cytosol, mitochondrion, nucleus | 31.5 | 27.6 |
| CDY09586 | Canola | cytosol | 32.04 | 27.59 |
| CDX84515 | Canola | cytosol | 35.22 | 27.41 |
| CDY02293 | Canola | cytosol, mitochondrion, nucleus | 31.86 | 27.31 |
| CDY37223 | Canola | cytosol | 29.03 | 27.2 |
| CDX81462 | Canola | cytosol | 29.03 | 27.2 |
| CDY29566 | Canola | cytosol | 27.43 | 26.82 |
| CDY18715 | Canola | cytosol | 34.16 | 26.66 |
| CDX72639 | Canola | cytosol | 27.08 | 26.47 |
| CDX81221 | Canola | cytosol | 34.16 | 26.44 |
| CDY44035 | Canola | cytosol | 26.9 | 26.43 |
| CDY50369 | Canola | cytosol | 23.89 | 26.32 |
| CDY22422 | Canola | cytosol | 26.73 | 26.26 |
| CDX96986 | Canola | cytosol | 28.85 | 26.04 |
| CDX83620 | Canola | cytosol | 24.25 | 25.05 |
| CDX69851 | Canola | cytosol | 27.79 | 24.92 |
| CDY17704 | Canola | cytosol | 24.42 | 24.6 |
| CDX77798 | Canola | cytosol | 24.42 | 24.6 |
| CDY13635 | Canola | cytosol | 24.6 | 24.22 |
| CDY29723 | Canola | cytosol | 27.43 | 22.24 |
| CDY20341 | Canola | cytosol | 27.61 | 21.97 |
| CDY72506 | Canola | cytosol | 4.78 | 21.26 |
| CDY12056 | Canola | plasma membrane | 31.68 | 11.09 |
Protein Annotations
| Gene3D:3.30.710.10 | MapMan:35.1 | GO:A0A078GFU2 | UniProt:A0A078GFU2 | InterPro:BTB/POZ_dom | EnsemblPlants:CDY23992 |
| ProteinID:CDY23992 | ProteinID:CDY23992.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 |
| GO:GO:0009628 | GO:GO:0009638 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00024508001 | InterPro:IPR000210 | InterPro:IPR027356 |
| InterPro:NPH3_dom | PFAM:PF00651 | PFAM:PF03000 | PFscan:PS50097 | PFscan:PS51649 | PANTHER:PTHR32370 |
| PANTHER:PTHR32370:SF17 | InterPro:RPT2 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00225 | SUPFAM:SSF54695 | UniPathway:UPA00143 |
| UniParc:UPI0004EDED4D | SEG:seg | : | : | : | : |
Description
BnaC03g16990DBnaC03g16990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFU2]
Coordinates
chrLK032152:+:366948..369935
Molecular Weight (calculated)
62827.5 Da
IEP (calculated)
6.702
GRAVY (calculated)
-0.190
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEGKTPIN INTMSSTLQR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RIDLSDIPGG AEMFEKAAKF CYGVSFEITV
101: QNVAALQCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GTKACDEAML PCRSPPNWWT EELCILNINF
201: LADVLASMKQ KGLKPSSLAS AIITYTERSL RDLFSDPENN DSEERTQQRH LVESIVSLLP SDKGLFPINF LCSLLRCAVF LNTSLASKNE VEKRISAVLE
301: HVTVDDLLVP SFTYDGERLL DLDSVRRIIS AFVEKEKSKK GLCSVSLQRV AKTVDSYLAE IATCLELTVS KFNAIANLVP KSARKSEDDL YRAVDIFLKA
401: HPSLGEIERE KVCSLMDPLK LSCDPRLHAS QNKRLPVNIV LHALYYDQLK LRSEVEDKEG TPVIVPEALG TRDSSLAKEN EDLRSELMKM KMYVSDLQNN
501: VAAGASSSNA PSNKKNSKHT FFSSVSKKLG KLNPFRHGSK DTSNIDEDLD GVDITKPRRR RFSIS
101: QNVAALQCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GTKACDEAML PCRSPPNWWT EELCILNINF
201: LADVLASMKQ KGLKPSSLAS AIITYTERSL RDLFSDPENN DSEERTQQRH LVESIVSLLP SDKGLFPINF LCSLLRCAVF LNTSLASKNE VEKRISAVLE
301: HVTVDDLLVP SFTYDGERLL DLDSVRRIIS AFVEKEKSKK GLCSVSLQRV AKTVDSYLAE IATCLELTVS KFNAIANLVP KSARKSEDDL YRAVDIFLKA
401: HPSLGEIERE KVCSLMDPLK LSCDPRLHAS QNKRLPVNIV LHALYYDQLK LRSEVEDKEG TPVIVPEALG TRDSSLAKEN EDLRSELMKM KMYVSDLQNN
501: VAAGASSSNA PSNKKNSKHT FFSSVSKKLG KLNPFRHGSK DTSNIDEDLD GVDITKPRRR RFSIS
001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
Arabidopsis Description
RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.