Factsheet for Os11t0118300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os05t0210600-01
Os05t0587300-01
Os06t0137700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	Os01t0218200-00	AT2G42580.1	19000166
AT2G30520.1	Os05t0210600-01	AT2G42580.1	19000166
AT2G30520.1	Os05t0587300-01	AT2G42580.1	19000166
AT2G30520.1	Os06t0137700-01	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0117400-01	Rice	plasma membrane	90.28	97.72
TraesCS4A01G192900.1	Wheat	cytosol	68.07	74.73
TraesCS4B01G122300.1	Wheat	cytosol, plastid	68.88	74.43
TraesCS4D01G120400.1	Wheat	cytosol, plastid	68.88	74.43
HORVU4Hr1G023260.3	Barley	cytosol, plastid	69.37	68.37
Zm00001d005051_P001	Maize	cytosol	61.43	65.68
OQU82741	Sorghum	plastid	63.53	65.12
Zm00001d023314_P001	Maize	cytosol	61.75	59.72
KXG22914	Sorghum	plastid	62.24	53.78
KRH30675	Soybean	cytosol	18.48	51.58
GSMUA_Achr11P...	Banana	cytosol, plastid	45.7	48.7
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	47.16	48.5
VIT_06s0004g08230.t01	Wine grape	mitochondrion	41.82	45.1
PGSC0003DMT400031245	Potato	cytosol	41.49	44.44
KRH17211	Soybean	cytosol	41.65	44.39
KRH72843	Soybean	cytosol	41.65	44.31
Solyc07g043130.2.1	Tomato	cytosol	41.33	44.27
KRG98106	Soybean	cytosol	41.0	44.15
CDY10743	Canola	cytosol	41.49	44.06
CDY02075	Canola	cytosol	41.0	43.62
Bra018309.1-P	Field mustard	cytosol, plastid	41.65	43.49
CDX84827	Canola	cytosol	39.71	43.36
CDY23992	Canola	cytosol	39.55	43.19
AT2G30520.1	Thale cress	cytosol	41.17	42.83
Bra022805.1-P	Field mustard	cytosol	39.87	42.78
KRH30676	Soybean	plastid	16.37	35.44
Os03t0206700-00	Rice	plasma membrane	30.96	30.51
Os03t0347700-01	Rice	mitochondrion, plastid	30.79	28.32
Os04t0636500-01	Rice	plasma membrane	26.9	25.78
Os11t0118500-00	Rice	plastid	26.58	25.51
Os08t0130600-01	Rice	plasma membrane	26.26	25.27
Os12t0117600-01	Rice	plastid	26.26	24.88
Os12t0613250-00	Rice	plasma membrane	25.93	24.62
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	26.09	24.54
Os03t0767600-01	Rice	cytosol	26.9	24.3
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	24.31	23.92
Os03t0205700-01	Rice	cytosol	23.34	23.8
Os09t0420900-01	Rice	cytosol	23.5	23.46
Os12t0583500-01	Rice	cytosol, plasma membrane	23.99	23.2
Os03t0609800-02	Rice	cytosol	23.66	23.03
Os01t0780600-01	Rice	plasma membrane	24.31	22.76
Os02t0568200-00	Rice	cytosol	26.9	21.78
Os09t0266600-01	Rice	cytosol	14.42	21.39
Os06t0184500-00	Rice	cytosol	22.2	21.27
Os02t0594700-01	Rice	cytosol, mitochondrion	4.38	14.21
Os12t0613300-02	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A0P0XY52	ProteinID:BAT12429.1	ncoils:Coil	GO:GO:0003674
GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	InterPro:IPR027356	InterPro:NPH3_dom	EnsemblPlantsGene:Os11g0118300
EnsemblPlants:Os11t0118300-01	PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000393AE94	SEG:seg	:	:

Description

Similar to RPT2-like protein. (Os11t0118300-01)

Coordinates

chr11:-:823449..825737

Molecular Weight (calculated)

65778.9 Da

IEP (calculated)

8.254

GRAVY (calculated)

-0.043

Length

617 amino acids

Sequence
(BLAST)

001: DRRKSYLPTF RELNKGELLN CHVPPAHCLS FQVPTGTSLL LHLPDFMDRT SQWVSSPDIP ADLLIRIADD VFPLHKAVMV PKCCYIRKAV AAARGGATAT
101: VDLDLSALPG AADAFDKVAR YCYGANFELS VRNAAALLCA AAFLDMHPTD GGLARRVEEF LAKVGLRTLP GAVAVLRSCE GLLPAAEEIG VVQRSADAIA
201: LRICNEVLFP TRSPPEWWTA ELAALSPASF HKVITALRCR RAEPEVLVAA ATAYAELLLA EVLAADGHAA DHSGMHRALV ESVVAVLPST DDAPLPAAFL
301: CHLLHVAITI GASAKTCHDL ELRVAAVLDQ ATAGDLLTVA LDGAGERVQN VDAVRRIITA FVERDSAASS GGGANGRNRR ASLSGAGALQ GGGGAMQTVA
401: KTVDEVAAEI ATEESLPISK FVGLAGAVPK EARATHDCLY RAVDIYLKAH PALEEMEREK VCSVMDPLKL SYQGRLHASQ NNRLPLQAVL SALYYDRLKL
501: RSGDEGGGGW DAYGNGVMRS SAAGSARKQA KEEASLAREN EALRSELARM RAYVSGMQQQ SKGSSSSRGK KGSWLRTLSR LNPFKAGIWG KDTSGIVDGK
601: TDAMNSVKSK RRRFSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.