Factsheet for Os12t0613250-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G042600.1	Wheat	cytosol	81.54	83.73
TraesCS5D01G051100.1	Wheat	cytosol	81.23	83.54
TraesCS5B01G046200.2	Wheat	mitochondrion	78.46	79.44
VIT_10s0003g04490.t01	Wine grape	cytosol	67.08	68.99
HORVU5Hr1G010370.2	Barley	plastid	80.92	66.67
Solyc02g021640.2.1	Tomato	nucleus	64.0	66.14
KRH37734	Soybean	cytosol	65.38	66.1
KRH12771	Soybean	cytosol	65.38	66.1
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	63.69	65.82
GSMUA_Achr5P02440_001	Banana	cytosol	58.0	65.79
GSMUA_Achr4P31620_001	Banana	cytosol	60.0	65.33
GSMUA_Achr6P30010_001	Banana	cytosol	54.77	64.96
GSMUA_Achr9P26110_001	Banana	cytosol	58.31	62.54
AT1G30440.1	Thale cress	cytosol, mitochondrion, nucleus	63.08	61.65
CDY02293	Canola	cytosol, mitochondrion, nucleus	62.15	61.3
CDY09586	Canola	cytosol	61.85	61.28
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	62.31	61.27
CDX90249	Canola	cytosol, mitochondrion, nucleus	59.23	61.01
Os08t0130600-01	Rice	plasma membrane	59.85	60.69
CDY27653	Canola	cytosol	55.08	57.93
CDX99692	Canola	cytosol, mitochondrion, nucleus	55.69	56.12
Bra025440.1-P	Field mustard	cytosol	48.92	55.5
Os04t0636500-01	Rice	plasma membrane	47.69	48.14
Os01t0780600-01	Rice	plasma membrane	48.46	47.8
Os03t0767600-01	Rice	cytosol	40.77	38.8
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	37.23	36.89
Os03t0609800-02	Rice	cytosol	33.38	34.23
Os12t0583500-01	Rice	cytosol, plasma membrane	33.54	34.17
Os03t0205700-01	Rice	cytosol	31.54	33.88
Os11t0118500-00	Rice	plastid	32.31	32.66
Os06t0184500-00	Rice	cytosol	32.15	32.45
Os12t0117600-01	Rice	plastid	32.46	32.41
Os03t0347700-01	Rice	mitochondrion, plastid	33.23	32.19
Os02t0568200-00	Rice	cytosol	36.92	31.5
Os03t0206700-00	Rice	plasma membrane	30.31	31.47
Os09t0420900-01	Rice	cytosol	29.38	30.91
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	27.23	28.23
Os12t0117400-01	Rice	plasma membrane	24.31	27.72
Os09t0266600-01	Rice	cytosol	17.08	26.68
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	24.62	25.93
CDY12056	Canola	plasma membrane	60.31	24.29
Os02t0594700-01	Rice	cytosol, mitochondrion	6.46	22.11
Os12t0613300-02	Rice	nucleus	1.69	3.7

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	EntrezGene:9272048	ProteinID:ABA99392.2	ProteinID:BAT18062.1	InterPro:BTB/POZ_dom
ncoils:Coil	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom
EnsemblPlantsGene:Os12g0613250	EnsemblPlants:Os12t0613250-00	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF32	UniProt:Q2QM90	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0000D89E87	RefSeq:XP_015619997.1	RefSeq:XP_015619998.1	SEG:seg	:	:

Description

SKIP interacting protein 17, SKIPa-interacting protein 17, SKIPa-interacting protein 17Similar to BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3. (Os12t0613250-00)

Coordinates

chr12:-:25977889..25982348

Molecular Weight (calculated)

72079.9 Da

IEP (calculated)

5.855

GRAVY (calculated)

-0.227

Length

650 amino acids

Sequence
(BLAST)

001: MGSMKLSSKP DAFTRRGQAW YCTTGLPSDV LVEVGEMSFH LHKFPLLSKS AILGRLIEEN SDSDECVIIL SDIPGGAKSF ELVARFCYGL KIELSSENVV
101: YLRCAAEHLE MTEETSGDNL INQTESFFNQ VVLRSWKDSL EALRTCDGLL PHAEDLHIVK RCIESLAGKA SIDPDLFGWP VSEHSTMQSP GGSVLWNGIS
201: TGAKVRNCSS DWWYDDASSL SFPTYKRLIS SMESRGIKQE IIAGSLTYYA KKFLPGLNRR QSTGPMPLPA ATLSDEEQRR LLEEIDRMLP LQRGLISTNV
301: LLWLLRTAMI LKVDRACISN LEKRVGMQLD EATLEDLLLP NFSYTMDTLY NVECVHRILD HFLAMDQTMG GGGASPCLDD VMASPSLAPI TAVAKLIDGY
401: LAEIAPDINL KPLKFQSLAA VLPEYARPLD DGLYRAIDVY LKSHPTLPEA EREQLCRLID CQKLSLEACT HAAQNERLPL RVVVQVLFFE QLQLRTSVAG
501: CLLVSDNLEA SSRTLRGGGA VAASGEAGCW ATAAVRENQA LRVGMDSMRL RLMELERECS DMRQDIRKLG RGRRRLRGGG GIVAGGKDGG GWAARVQRML
601: TPRMMKLQMC SAQHDAAEQQ RMNNEHKKVE KVAKNKKQLS MDDGDDEEEA

Best Arabidopsis Sequence Match ( AT1G30440.1 )
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER

Arabidopsis Description

BTB/POZ domain-containing protein At1g30440 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Q9]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.