Factsheet for Solyc02g021640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	98.73	98.73
VIT_10s0003g04490.t01	Wine grape	cytosol	84.9	84.49
KRH37734	Soybean	cytosol	82.99	81.18
KRH12771	Soybean	cytosol	82.67	80.87
AT1G30440.1	Thale cress	cytosol, mitochondrion, nucleus	77.9	73.68
CDY09586	Canola	cytosol	74.88	71.8
CDY02293	Canola	cytosol, mitochondrion, nucleus	75.04	71.62
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	75.2	71.56
CDX90249	Canola	cytosol, mitochondrion, nucleus	71.38	71.16
GSMUA_Achr6P30010_001	Banana	cytosol	61.84	70.99
GSMUA_Achr5P00550_001	Banana	cytosol	70.59	70.59
GSMUA_Achr5P02440_001	Banana	cytosol	64.07	70.33
EER91175	Sorghum	cytosol	70.11	69.89
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	69.79	69.79
GSMUA_Achr9P26110_001	Banana	cytosol	67.09	69.64
GSMUA_Achr4P31620_001	Banana	cytosol	65.82	69.35
TraesCS5D01G385100.1	Wheat	plastid	68.84	68.08
HORVU5Hr1G093120.2	Barley	cytosol	68.36	67.82
CDY27653	Canola	cytosol	65.82	66.99
CDX99692	Canola	cytosol, mitochondrion, nucleus	66.93	65.27
Bra025440.1-P	Field mustard	cytosol	59.14	64.92
Os08t0130600-01	Rice	plasma membrane	65.98	64.74
TraesCS5A01G042600.1	Wheat	cytosol	65.02	64.61
TraesCS5A01G375500.3	Wheat	peroxisome	66.14	64.6
TraesCS5D01G051100.1	Wheat	cytosol	64.86	64.56
Os12t0613250-00	Rice	plasma membrane	66.14	64.0
TraesCS5B01G377600.1	Wheat	cytosol	68.84	63.86
HORVU7Hr1G073650.1	Barley	cytosol	64.23	63.03
TraesCS7D01G306400.1	Wheat	cytosol	64.39	62.99
TraesCS7B01G209700.1	Wheat	cytosol	64.07	62.67
EES14497	Sorghum	cytosol	65.5	62.61
TraesCS7A01G309700.1	Wheat	cytosol	63.59	62.21
TraesCS5B01G046200.2	Wheat	mitochondrion	63.12	61.84
Zm00001d035208_P002	Maize	cytosol	64.71	61.39
Solyc09g007820.1.1	Tomato	cytosol	54.53	57.45
HORVU5Hr1G010370.2	Barley	plastid	65.34	52.09
Solyc02g090070.2.1	Tomato	nucleus	48.01	46.39
Solyc11g066730.1.1	Tomato	cytosol	43.88	43.74
Solyc09g061250.2.1	Tomato	cytosol	37.52	38.88
Solyc10g047530.1.1	Tomato	cytosol	40.06	37.39
Solyc09g048980.2.1	Tomato	cytosol	31.16	37.12
Solyc01g105680.2.1	Tomato	nucleus	39.43	37.07
Solyc02g092480.2.1	Tomato	cytosol	35.77	35.83
Solyc02g092560.2.1	Tomato	cytosol, nucleus	33.23	35.07
Solyc01g107180.2.1	Tomato	cytosol	34.82	34.98
Solyc08g006870.2.1	Tomato	cytosol	33.86	34.63
Solyc10g049660.1.1	Tomato	cytosol	33.07	34.04
Solyc03g044090.2.1	Tomato	cytosol	34.02	33.97
Solyc07g043130.2.1	Tomato	cytosol	31.0	33.85
Solyc09g074630.2.1	Tomato	cytosol	27.34	33.66
Solyc05g051580.2.1	Tomato	cytosol	33.23	33.49
Solyc05g013570.2.1	Tomato	nucleus	31.96	32.95
Solyc02g064720.2.1	Tomato	cytosol	30.52	31.74
Solyc01g098820.2.1	Tomato	cytosol, extracellular	25.91	29.42
CDY12056	Canola	plasma membrane	71.86	28.0
Os12t0613300-02	Rice	nucleus	1.27	2.69

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000210
InterPro:IPR027356	UniProt:K4B512	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF12	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
EnsemblPlantsGene:Solyc02g021640.2	EnsemblPlants:Solyc02g021640.2.1	UniParc:UPI00027689E4	:	:	:

Description

No Description!

Coordinates

chr2:-:23331971..23335731

Molecular Weight (calculated)

69824.0 Da

IEP (calculated)

5.768

GRAVY (calculated)

-0.255

Length

629 amino acids

Sequence
(BLAST)

001: MACMKLGSKT DAFQRKGQAW FCTTGLPSDI VVEVGEMTFH LHKFPLLSRS GVMEKRIAEA SEGEDGCVIE LNDIPGGAKT FELVAKFCYG VKLELTAGNA
101: VYLRCAAEHL DMTEEYGEGN LISQTEIFLN QVVLRSWKDS LKALQTCDDV LPYAEELRIT KRCIDSLAVK ACTDPNLFGW PVMEHVGPLQ SPGGSILWNG
201: ISTGARPKHS SSDWWYEDAS TLSLPLYKRL ISAMESQGVK QDIVAGSLSY YAKKYLPGLN RRQTSSESTN RLAPVGLGSS LSEEDQKLLL EEVDNLLPMQ
301: KGLVPTKFLF GLLKTALILR ACPSCISNLE KRIGMQLDQA TLEDLLMPNF SYSMETLYNV DCVQRILEHF LAMDQGTGGE SPCSIDDEQL IGSPSLTPIT
401: MVAKLIDGYL AEVAPDVNLK LPKFQTLAAS VPEYARPLDD GLYRAIDIYL KSHPWLGESD REQLCRLMDC QKLSLEACTH AAQNERLPLR IIVQVLFFEQ
501: LQLRTSIAGC FLVSENLDEG SRQLRSGTVG PNEGGWATAV RENQVLKVGM DSMRVRVSEL EKECSTMRQE IEKLGRSKGS STWGNVSKKF GFKMKSQMCS
601: AQEGSVSNQN KINSKAIKDD KAKENYRKH

Best Arabidopsis Sequence Match ( AT1G30440.1 )
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER

Arabidopsis Description

BTB/POZ domain-containing protein At1g30440 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Q9]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.