Factsheet for Solyc01g098820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073584	Potato	cytosol	95.31	95.31
KRG92834	Soybean	cytosol	49.82	48.85
KRH33962	Soybean	cytosol	49.46	48.5
Solyc10g047530.1.1	Tomato	cytosol	36.1	29.67
Solyc01g105680.2.1	Tomato	nucleus	35.38	29.3
Solyc05g051580.2.1	Tomato	cytosol	31.23	27.72
Solyc09g007820.1.1	Tomato	cytosol	28.52	26.47
Solyc09g048980.2.1	Tomato	cytosol	24.73	25.95
Solyc02g021640.2.1	Tomato	nucleus	29.42	25.91
Solyc07g043130.2.1	Tomato	cytosol	26.71	25.69
Solyc05g013570.2.1	Tomato	nucleus	28.16	25.57
Solyc09g061250.2.1	Tomato	cytosol	27.98	25.54
Solyc02g092560.2.1	Tomato	cytosol, nucleus	27.44	25.5
Solyc03g044090.2.1	Tomato	cytosol	28.88	25.4
Solyc10g049660.1.1	Tomato	cytosol	27.98	25.37
Solyc02g092480.2.1	Tomato	cytosol	27.98	24.68
Solyc01g107180.2.1	Tomato	cytosol	27.62	24.44
Solyc02g090070.2.1	Tomato	nucleus	28.7	24.42
Solyc02g064720.2.1	Tomato	cytosol	26.53	24.3
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.7	24.24
Solyc08g006870.2.1	Tomato	cytosol	26.35	23.74
Solyc11g066730.1.1	Tomato	cytosol	25.81	22.66
Solyc09g074630.2.1	Tomato	cytosol	17.87	19.37
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g098820.2.1	EnsemblPlantsGene:Solyc01g098820.2	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil
PANTHER:PTHR32370	PANTHER:PTHR32370:SF31	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
SEG:seg	SUPFAM:SSF54695	UniParc:UPI0002768992	UniProt:K4B0R9	MapMan:35.1	:

Description

No Description!

Coordinates

chr1:+:89228881..89231094

Molecular Weight (calculated)

63486.0 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.257

Length

554 amino acids

Sequence
(BLAST)

001: MVKENPVTGE SIFVEKRNHC VIYPASGSMV AESVERRNKN WYVQTKIPSD LIVEIRDQSF HLHKLSVVSR SGYLNRLVFE RNGNNYTRVQ IDTIPGGAKI
101: FELVVKFCYG LKIKATASNV APLYCAAHFL EMNDELHQGN LISKAEAFLS YVILSSWKDT FRILKSCESV SSWSKDLHIV KRCTEAISWK ACSETGVSSI
201: GDEEVLVNVA ADDTTKLVKL CGNWFFNDFS SLRIDHFIEV ISLMKKREIK PELVGSCIAH WTKKWISQIT VSQDKLKDQE LSIQLQRVTT ECLIRVLPAE
301: EDSVSSNFLL HLYKIGLIMN INPKLKDHLK TRIALMLEKC SAKDLLVRNS TTLFDVDIVV QVVEAYVSLA SNNPKSRMCV VGRLVNDYLT LIARDENLVA
401: RSFDSLVNAL PKEARFCDDN LYRSIDMYLK EHPDLTEEER RSICRKMEHH KLSQEAQIHA LKNDRLPDNI RTQLIILEQV NMMRLLTSDG SSYQRAKSQN
501: IMEVSSGLRK NWIDSSQKEM KAIKQELEML KAQVGELQQR RMELQRRTKK AVCC

Best Arabidopsis Sequence Match ( AT5G10250.2 )
(BLAST)

001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVSSP EVYTIYNVDV VHRIFEFFLM HEQQQVLGKP
401: SISKLLDNYL AEIAKDPYLP ITKFQVLAEM LPENAWKCHD GLYRAIDMFL KTHPSLSDHD RRRLCKTMNC EKLSLDACLH AAQNDRLPLR TIVQINTQVL
501: FSEQVKMRMM MQDKLPEKEE ENSGGREDKR MSRDNEIIKT LKEELENVKK KMSELQSDYN ELQQEYERLS SKQKSSHNWG LRWQKVKKSF QTKREDEETR
601: ERTRRRSSTG QRTSFRRRMS MS

Arabidopsis Description

DOT3Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G10250]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.