Factsheet for PGSC0003DMT400073584

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098820.2.1	Tomato	cytosol, extracellular	95.31	95.31
KRG92834	Soybean	cytosol	50.54	49.56
KRH33962	Soybean	cytosol	50.18	49.2
PGSC0003DMT400006173	Potato	cytosol	35.74	29.29
PGSC0003DMT400083737	Potato	cytosol	34.84	29.29
PGSC0003DMT400018688	Potato	cytosol	31.59	27.96
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	29.6	26.07
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	28.7	26.07
PGSC0003DMT400010359	Potato	cytosol	26.53	25.43
PGSC0003DMT400013928	Potato	cytosol	27.98	25.41
PGSC0003DMT400045508	Potato	cytosol	27.8	25.37
PGSC0003DMT400038537	Potato	cytosol	28.7	25.36
PGSC0003DMT400031245	Potato	cytosol	26.35	25.35
PGSC0003DMT400047866	Potato	cytosol	28.7	25.32
PGSC0003DMT400093531	Potato	cytosol	24.19	24.91
PGSC0003DMT400003100	Potato	cytosol	26.9	24.87
PGSC0003DMT400064174	Potato	cytosol	27.98	24.68
PGSC0003DMT400066161	Potato	cytosol	27.44	24.28
PGSC0003DMT400026008	Potato	cytosol	28.88	24.28
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.7	24.24
PGSC0003DMT400022573	Potato	cytosol	26.71	24.07
PGSC0003DMT400033866	Potato	cytosol	25.99	23.96
PGSC0003DMT400001154	Potato	cytosol	26.17	22.98
PGSC0003DMT400029528	Potato	cytosol	17.69	19.25
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

EntrezGene:102599882	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1CSA3	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400028584	PGSC:PGSC0003DMG400028584	EnsemblPlants:PGSC0003DMT400073584	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF31	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000294F757
RefSeq:XP_006361903.1	SEG:seg	:	:	:	:

Description

Coleoptile phototropism protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028584]

Coordinates

chr1:+:76467253..76469640

Molecular Weight (calculated)

63579.2 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.240

Length

554 amino acids

Sequence
(BLAST)

001: MVKENPVTGE SIFIEKRNHC VIYPASGSMV AESVERRNKN WFVQTKIPSD LIVEIRDQSF HLHKLSVVSR SGYLNRLVFE RNGNNYTRVQ IDTIPGGAKI
101: FELVVKFCYG LKIKATASNV APLYCAAHFL EMNDELYQGN LISKAEAFLS YVILSSWKDT FRILKSCESV SSWSKDLHIV KRCTEAISWK ACSETGVSSI
201: GDNEVLVNVT ADDTTKLVKL CGNWFFHDFS SLRIDHFIEV ISLIKKRKIK PELVGSCIAH WTKKWISQIT VSQEKSKDQE LSIQLQRVTT ECLIRVLPAE
301: EDSVSSNFLL HLYKIGLIMN INPKLKDQLK TRIALMMEKC SAKDLLVRNS TTLFDVDIVV QVVEAYVSLA SNNPKSRMCV VGRLVNDYLA LIARDENLVA
401: RSFDSLVNAL PKEARFCDDN LYRSIDMYLK EHPDLTEEER RSICRKMEYH KLSQEAQIHA LKNDRLPDNI RTQFILLEQV NMMRLLTSDG SSYQRTKSQT
501: IMKVSSGLRK SWMNSSQTEM KAIKQELEML KAQVGELQQR RMELQQRTKK VVFC

Best Arabidopsis Sequence Match ( AT1G30440.1 )
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER

Arabidopsis Description

BTB/POZ domain-containing protein At1g30440 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Q9]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.