Factsheet for PGSC0003DMT400026008

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027500
PGSC0003DMT400027505
PGSC0003DMT400049840

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	PGSC0003DMT400027500	AT1G03140.1	21798944
AT5G66560.1	PGSC0003DMT400027505	AT1G03140.1	21798944
AT5G66560.1	PGSC0003DMT400049840	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090070.2.1	Tomato	nucleus	94.69	95.85
VIT_00s0207g00230.t01	Wine grape	cytosol	70.11	72.76
KRH08351	Soybean	cytosol	64.34	65.43
CDY45241	Canola	cytosol	58.88	64.88
KRH28552	Soybean	cytosol	57.51	64.02
CDY30765	Canola	cytosol	61.46	63.88
KRH69999	Soybean	endoplasmic reticulum	64.34	62.35
AT5G66560.1	Thale cress	cytosol	62.52	61.68
Bra012082.1-P	Field mustard	cytosol	61.91	60.99
AT3G50840.1	Thale cress	cytosol	51.14	59.23
KRH76914	Soybean	cytosol	45.52	58.82
CDX77951	Canola	cytosol	48.86	58.76
GSMUA_Achr9P26440_001	Banana	cytosol	51.29	58.08
GSMUA_Achr8P04840_001	Banana	cytosol	51.29	57.48
CDX73781	Canola	cytosol	47.5	57.43
Bra036858.1-P	Field mustard	cytosol	49.47	56.79
OQU91026	Sorghum	cytosol, nucleus, plastid	47.34	52.17
HORVU5Hr1G093880.1	Barley	cytosol	32.17	50.96
Zm00001d033941_P001	Maize	mitochondrion, plastid	48.56	50.71
EER93390	Sorghum	cytosol	51.59	50.3
Os03t0767600-01	Rice	cytosol	51.75	49.93
TraesCS5D01G389200.2	Wheat	cytosol, plastid	48.56	49.46
TraesCS5B01G408200.1	Wheat	cytosol	50.38	49.26
TraesCS5D01G413400.1	Wheat	cytosol	50.08	49.03
TraesCS5A01G379300.1	Wheat	cytosol, plastid	48.25	48.85
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	48.56	48.78
TraesCS5A01G403400.1	Wheat	cytosol	49.92	48.67
HORVU5Hr1G093850.15	Barley	mitochondrion	48.1	48.32
TraesCS5B01G383100.1	Wheat	plastid	47.95	48.32
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	45.98	48.17
HORVU5Hr1G098170.1	Barley	cytosol, mitochondrion	49.77	47.88
TraesCS1B01G298700.1	Wheat	cytosol, plastid	29.89	47.58
Zm00001d013182_P003	Maize	cytosol, mitochondrion	50.68	47.51
TraesCS2D01G507400.1	Wheat	nucleus	39.3	47.09
PGSC0003DMT400093531	Potato	cytosol	34.14	41.82
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	38.7	41.8
PGSC0003DMT400001154	Potato	cytosol	37.03	38.67
PGSC0003DMT400003100	Potato	cytosol	33.54	36.89
PGSC0003DMT400010359	Potato	cytosol	32.32	36.85
PGSC0003DMT400045508	Potato	cytosol	33.84	36.74
PGSC0003DMT400031245	Potato	cytosol	31.11	35.59
PGSC0003DMT400083737	Potato	cytosol	34.75	34.75
PGSC0003DMT400006173	Potato	cytosol	35.2	34.32
PGSC0003DMT400066161	Potato	cytosol	31.56	33.23
PGSC0003DMT400018688	Potato	cytosol	31.56	33.23
PGSC0003DMT400033866	Potato	cytosol	30.2	33.11
PGSC0003DMT400029528	Potato	cytosol	25.34	32.81
PGSC0003DMT400013928	Potato	cytosol	30.35	32.79
PGSC0003DMT400064174	Potato	cytosol	31.11	32.64
PGSC0003DMT400047866	Potato	cytosol	30.8	32.32
PGSC0003DMT400038537	Potato	cytosol	30.65	32.22
PGSC0003DMT400022573	Potato	cytosol	30.05	32.2
PGSC0003DMT400073584	Potato	cytosol	24.28	28.88
GSMUA_Achr3P25690_001	Banana	nucleus	46.13	25.46

Protein Annotations

EntrezGene:102603771	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1AMG6	InterPro:NPH3_dom	PFAM:PF03000
EnsemblPlantsGene:PGSC0003DMG400010034	PGSC:PGSC0003DMG400010034	EnsemblPlants:PGSC0003DMT400026008	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF8	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI000294EAFC	RefSeq:XP_006338256.1
SEG:seg	:	:	:	:	:

Description

Photoreceptor-interacting protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010034]

Coordinates

chr2:+:44679937..44682862

Molecular Weight (calculated)

73539.0 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.485

Length

659 amino acids

Sequence
(BLAST)

001: MPHSDHPTTK GQAWFCTTGL PSDIIIEVED MTFHLHKFPL MSKSRKLHEM ITEQETNASS SKIQKPAERD NDCDGDEEIE EEEDNEEDQQ YCISFPDFPG
101: GSETFETAAK FCYGVKIELS ASNVAPLRCA GEYLEMTEEY SEDNLISKTE RFLSQTVLKS IKDSIRTLNS CKNMLPLAET LGIVQRCIDA VAVRASTADP
201: SLFGWPVNDH GPGNGVEANT RRKGANRGGG MDSWFEELGY LSLPLFKRLI SAMKSRDLSS EVIESCLMYY AKKYIPGISR SSRNASSSSI PSENEQRELL
301: ETIITNLPEE TSSRTSTTTR ILFGLLRTAN ILNASEAARA SLERKIGSQL EQATLDDLLI PSYSYLNETL YDVACVERIL GYFLNGLEER STVRIQGEEE
401: NISVRSTALM LVGKLIDGYL SEIASDNNLL PEKFCELAVA LPDQARLFDD GLYRAVDVYL KAHPWISEAE REQICGVMDC QKLTLEACTH AAQNERLPLR
501: AVVQVLFFEQ LQLRQAIAGT LMVADVNPEE IPRLSIMDGR EGEGEGGEQE ETTGVVGMAR AQEGSSTWRK TVRENQVLRL DMDSMRTRVQ ELERECSSMK
601: KVIQKIDKVG KHGSNGGREG GGGGWRKKLG CKFKTQVCDS HEPTVVEAKK GRGHRHQHQ

Best Arabidopsis Sequence Match ( AT5G66560.1 )
(BLAST)

001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS

Arabidopsis Description

BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.