Factsheet for PGSC0003DMT400045508

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061250.2.1	Tomato	cytosol	97.53	97.53
PGSC0003DMT400003100	Potato	cytosol	82.87	83.97
VIT_07s0005g06300.t01	Wine grape	cytosol	83.69	82.47
KRH66064	Soybean	extracellular	78.91	78.14
AT5G48800.1	Thale cress	cytosol	74.79	73.94
CDX85365	Canola	cytosol	74.96	73.39
CDX86278	Canola	cytosol	74.79	73.23
Bra037460.1-P	Field mustard	cytosol	74.63	73.06
KRG99570	Soybean	cytosol, endoplasmic reticulum, nucleus	80.23	72.26
GSMUA_Achr6P27970_001	Banana	cytosol	56.67	66.54
PGSC0003DMT400010359	Potato	cytosol	49.75	52.25
PGSC0003DMT400029528	Potato	cytosol	36.74	43.81
PGSC0003DMT400033866	Potato	cytosol	39.04	39.43
PGSC0003DMT400031245	Potato	cytosol	36.24	38.19
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	39.04	37.68
PGSC0003DMT400093531	Potato	cytosol	31.96	36.06
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	35.26	35.08
PGSC0003DMT400026008	Potato	cytosol	36.74	33.84
PGSC0003DMT400006173	Potato	cytosol	36.08	32.4
PGSC0003DMT400001154	Potato	cytosol	33.61	32.33
PGSC0003DMT400083737	Potato	cytosol	34.93	32.17
PGSC0003DMT400064174	Potato	cytosol	33.11	32.01
PGSC0003DMT400066161	Potato	cytosol	32.78	31.79
PGSC0003DMT400038537	Potato	cytosol	32.29	31.26
PGSC0003DMT400018688	Potato	cytosol	32.13	31.15
PGSC0003DMT400013928	Potato	cytosol	31.14	30.98
PGSC0003DMT400022573	Potato	cytosol	31.14	30.73
PGSC0003DMT400047866	Potato	cytosol	31.3	30.25
PGSC0003DMT400073584	Potato	cytosol	25.37	27.8

Protein Annotations

EntrezGene:102585851	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1BHS4	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400017655	PGSC:PGSC0003DMG400017655	EnsemblPlants:PGSC0003DMT400045508	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF21	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI0002951843
RefSeq:XP_006356774.1	SEG:seg	:	:	:	:

Description

Phototropic-responsive NPH3 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017655]

Coordinates

chr9:-:43863467..43866473

Molecular Weight (calculated)

68588.2 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.288

Length

607 amino acids

Sequence
(BLAST)

001: MDKHHSQLAL AKCSRHQRYN EWVFRDVPSD IMIVVDGGTF SLHKFPLVSR SGRIRKLVAG HRDSDISMIE LLSLPGGAES FELAAKFCYG VNFEITAANV
101: AQLCCVSDYL EMTDEYSKNN LGSRAEEYLE VVVSKNLEMC VEVLKQCENL LPLADELKVV IRCIDAIASK ACVEQIASSF SRLEYSSSGR LHMNRQAKCE
201: GDWWIEDLSV LRIDLYQRVI TAMKCRGVRP ESIAASLVNY AQKELTKKST SWNQSTQPKV DVVSGSNDHE KVVVETIVSL MPVEKLVVPI TFLFGLLRSA
301: VMLDCTVACR LDLERRIGSQ LDIATLNDLL IPSFHNAGET LFDVDTVHRI LVSFSQQEDS DEDMDDVSVF ESDSPTSPSQ TALFKVAKLV DNYLAEIAPD
401: ANLKLNKFIA IAESLPAHAR TIHDGLYRAI DVYLKAHQAL SDPDRRRLCK LIDFQKLSQE SGAHAAQNER LPLQSIVQVL YFEQMRLRNA LFCSYPDDDH
501: KPMHQSWRIN SGAVSAAMSP RDNYASLRRE NKELKLELAR MRMRLNDLEK DHVCMKKNME KSNSRRFMST FTKKIGKLNI FGHSSSRESS SPSKRSQVTD
601: SKLTERT

Best Arabidopsis Sequence Match ( AT5G48800.1 )
(BLAST)

001: MDKHHHQHLL LQHHQHLHHH QKLSLAKSSR QSCSEWIFRD VPSDITIEVN GGNFALHKFP LVSRSGRIRR IVAEHRDSDI SKVELLNLPG GAETFELAAK
101: FCYGINFEIT SSNVAQLFCV SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA IASKACAEQI ASSFSRLEYS
201: SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV
301: ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN
401: LDLSKFLLIA EALPPHARTL HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF EQLKLRSSLC SSYSDEEPKP
501: KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT
601: DSKVLMERTC ASTD

Arabidopsis Description

BTB/POZ domain-containing protein At5g48800 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.