Factsheet for PGSC0003DMT400001154

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066730.1.1	Tomato	cytosol	96.99	96.99
VIT_06s0061g01140.t01	Wine grape	cytosol	70.84	77.07
KRH22745	Soybean	cytosol	69.73	69.51
KRH26561	Soybean	cytosol	69.89	69.45
Bra037606.1-P	Field mustard	cytosol	61.65	60.69
AT3G44820.1	Thale cress	cytosol	62.44	60.52
GSMUA_Achr10P...	Banana	cytosol	48.97	55.88
CDY29723	Canola	cytosol	61.33	55.52
CDY20341	Canola	cytosol	62.12	55.21
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	44.22	44.36
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	38.99	40.33
PGSC0003DMT400093531	Potato	cytosol	33.6	39.41
PGSC0003DMT400026008	Potato	cytosol	38.67	37.03
PGSC0003DMT400003100	Potato	cytosol	32.81	34.56
PGSC0003DMT400045508	Potato	cytosol	32.33	33.61
PGSC0003DMT400006173	Potato	cytosol	34.87	32.54
PGSC0003DMT400083737	Potato	cytosol	33.91	32.47
PGSC0003DMT400010359	Potato	cytosol	28.21	30.8
PGSC0003DMT400047866	Potato	cytosol	29.79	29.94
PGSC0003DMT400018688	Potato	cytosol	28.68	28.91
PGSC0003DMT400033866	Potato	cytosol	27.42	28.79
PGSC0003DMT400013928	Potato	cytosol	27.26	28.2
PGSC0003DMT400022573	Potato	cytosol	27.42	28.13
PGSC0003DMT400066161	Potato	cytosol	27.89	28.11
PGSC0003DMT400064174	Potato	cytosol	27.89	28.03
PGSC0003DMT400031245	Potato	cytosol	25.52	27.95
PGSC0003DMT400038537	Potato	cytosol	27.73	27.91
PGSC0003DMT400073584	Potato	cytosol	22.98	26.17
PGSC0003DMT400029528	Potato	cytosol	20.92	25.93

Protein Annotations

EntrezGene:102587598	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M0ZI05	InterPro:NPH3_dom
PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400000434	PGSC:PGSC0003DMG400000434	EnsemblPlants:PGSC0003DMT400001154	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF27	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000295262A	RefSeq:XP_006349068.1
SEG:seg	:	:	:	:	:

Description

Non-phototropic hypocotyl 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000434]

Coordinates

chr11:+:39610654..39618826

Molecular Weight (calculated)

70452.9 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.128

Length

631 amino acids

Sequence
(BLAST)

001: MAPAAKVTGF YREGNDWFCN ASLVSDFTLV VDGVNFHLHK FPLMSRCGRI DKILGAAQGP HEGTFLTTLE DFPGGSDIFL VTVKFCYGIR IEYTPRNIVM
101: IYCAADYLEM TEDYGEDNLL FKADAYFHKN ILKNWKDCIL TLQSCDSVIP RADKLEIISK CSHALSVMVC TDPSLFGWPM LLYGCLQSPG GSILWNGINT
201: GARIQTIESD WWFEDISYLS VPLFQRLIRT MEARGIRHEN LAGAMMYYCR KYLPGLGRWQ SGQIGKTRTV ASFSMTPAAV DQKVLLESVA KQLPELKGKS
301: FCRFLLGLLR VALILGVHHT CLDSLERRAG MQLDLASLDG LLIPSYSDSD TLYNTDCVER MIHHFISSES GITAIPDPSS FEIGTSPSSH PLRRVAKLVD
401: SYIAEVASDV NLKPGKVRSL AEALPESSRS LHDGLYRALD IYFKAHPWLS AKEKEQLCNI IDFQKLSIDA CAHASQNDRL PLRVVLQVLF FEQLQLRTAL
501: AGCFQVLDTE SGPAAPVTGP SDMAGQIVQR DGWVTVVREN QGLKVDLERM KSRVGELEEE FSKIKQEMRK VTKSHSYLSS PRFLARRIGC KLLPQSSDTQ
601: PDVVESTGPT PRSSVEQPRS SRHHKSSSLI S

Best Arabidopsis Sequence Match ( AT3G44820.1 )
(BLAST)

001: MSPVAKVSEF HREGNDWFCK TGLSSDITVV VDDVKFHLHK FPLVSKCGKL ARMYEDSKST DKQSLWTTVL EEFPGGADNF LIVARFCYGA RVDITSKNLV
101: SIHCAAEYLE MTNEYGEDNL ISQVETFLHK HVLRNWKDCI LALQSSSPVL KSAEKLQMIP KLMNAVSTMV CTDPSLFGWP MMMYGTLQSP GGSILWNGIN
201: TGARMRSSGS DWWYEDISYL SVDLFKRLIK TMETKGIRAE SLAGAMMYYA RKYLPGLGRW QSGTSDSSKS RRRVVSFNLA KASSPSSMPP LDQIALLETI
301: LSLLPEKRGR SFCKFLLGLL RVAFILGVDG NCVKKLEKRI GMQLELATLD NLLILNYSDS ETLYNVDCVE RIVRHFVSSL SSSSSQLPEF SPPSLDPVTS
401: PSPAPLKKVA NLVDSYMAEV ASDVNLKPDK MRSLAAALPE SSRPLYDGLY RAFDIYFKEH PWLSDRDKEQ LCNIMDYQRL SIDACAHASH NDRLPLRVVL
501: QVLFFEQMHL RTALAGGLNV ANTETAHAVT IPGGRTGQEI VQRDGWVTVV RQNQVLKVDM QKMRSRVGEL EEEFQSIKQE MKKRVSKSSS SMSSPRLVKL
601: GCKFLLPRAS DAKNDTVQNS VSSTPRSATA DHTLPRSSRH SKHRKSFSFF G

Arabidopsis Description

BTB/POZ domain-containing protein At3g44820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.