Factsheet for PGSC0003DMT400029528

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074630.2.1	Tomato	cytosol	98.62	98.24
VIT_07s0104g01440.t01	Wine grape	plastid	85.27	68.78
KRH31912	Soybean	cytosol	80.16	64.97
KRH71541	Soybean	plastid	79.76	64.44
KRH68133	Soybean	cytosol, plastid	76.42	61.84
KRG96392	Soybean	plastid	76.03	61.62
AT1G03010.1	Thale cress	cytosol	74.46	59.78
Bra033365.1-P	Field mustard	cytosol	72.1	58.25
CDX89922	Canola	cytosol	71.91	58.1
CDY18140	Canola	cytosol	71.71	57.94
CDY32492	Canola	cytosol	71.71	57.21
Bra032564.1-P	Field mustard	cytosol, plastid	71.51	57.05
GSMUA_Achr8P30170_001	Banana	plastid	62.08	56.63
GSMUA_Achr1P11260_001	Banana	plastid	62.67	55.67
Bra029894.1-P	Field mustard	plastid	66.01	52.01
CDY52208	Canola	plastid	65.62	51.7
AT2G47860.3	Thale cress	plastid	66.01	51.06
TraesCS5D01G463700.1	Wheat	plastid	63.26	49.31
CDX83030	Canola	plastid	51.67	49.16
TraesCS7A01G184200.2	Wheat	plastid	64.44	49.1
HORVU1Hr1G055870.1	Barley	plastid	64.05	49.02
TraesCS5B01G461900.4	Wheat	plastid	63.26	49.01
Zm00001d047483_P002	Maize	plastid	62.28	49.0
OQU92601	Sorghum	plastid	63.26	48.71
CDY37449	Canola	cytosol	45.78	47.94
Os03t0347700-01	Rice	mitochondrion, plastid	63.06	47.84
PGSC0003DMT400010359	Potato	cytosol	43.03	37.89
PGSC0003DMT400003100	Potato	cytosol	44.2	37.56
PGSC0003DMT400045508	Potato	cytosol	43.81	36.74
PGSC0003DMT400033866	Potato	cytosol	35.17	29.78
PGSC0003DMT400093531	Potato	cytosol	31.43	29.74
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	33.4	27.03
PGSC0003DMT400031245	Potato	cytosol	30.26	26.74
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	31.63	26.39
PGSC0003DMT400026008	Potato	cytosol	32.81	25.34
PGSC0003DMT400083737	Potato	cytosol	31.83	24.58
PGSC0003DMT400038537	Potato	cytosol	30.06	24.4
PGSC0003DMT400006173	Potato	cytosol	32.02	24.11
PGSC0003DMT400064174	Potato	cytosol	29.47	23.89
PGSC0003DMT400018688	Potato	cytosol	29.27	23.8
PGSC0003DMT400013928	Potato	cytosol	28.09	23.44
PGSC0003DMT400047866	Potato	cytosol	28.49	23.09
PGSC0003DMT400066161	Potato	cytosol	28.29	23.0
PGSC0003DMT400022573	Potato	cytosol	26.92	22.28
PGSC0003DMT400001154	Potato	cytosol	25.93	20.92
PGSC0003DMT400073584	Potato	cytosol	19.25	17.69

Protein Annotations

MapMan:35.1	ncoils:Coil	GO:GO:0000003	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856
GO:GO:0009860	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
InterPro:IPR027356	UniProt:M1ASZ0	InterPro:NPH3_dom	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400011359	PGSC:PGSC0003DMG400011359
EnsemblPlants:PGSC0003DMT400029528	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF30	UniParc:UPI000296481E	SEG:seg

Description

Phototropic-responsive NPH3 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011359]

Coordinates

chr9:+:52146953..52149205

Molecular Weight (calculated)

57682.4 Da

IEP (calculated)

8.829

GRAVY (calculated)

-0.333

Length

509 amino acids

Sequence
(BLAST)

001: MTEDISEKNL ETRTEVFLKD IVFPHISNSI SVLHRCETLL PVSEEVNLVS RLINAIASNA CKEQLTSGLS KLEYNFPPKP VQCLDSETPS DWWGKSLAVL
101: NLDFFQRVLS AVKTKGLKQD IISRILINYA QNSLQGIFIK DPQLVKGSYL DLDLQKRQRI IVETIASLLP TQSRKSTVPM AFLSSLLKSA IAASASTSCR
201: SDLERRIGLQ LDQAILEDIL IPANPHGNNH SPLYDIDSIL RIFSFFLNLD EDDEEDNPLR DESEMVYDFD SPGSPKHSSI VKVSKLLDNY LAEVALDSNL
301: TASKYIALAE LLPDHARLVY DGLYRAVDIF LKVHPNIKDS ERYRLCKSID CQKLSQEACS HAAQNERLPV QMAVQVLYFE QIRLRNAMNG GHNQFFGMNN
401: QFPQRSGSGA GSGCISPRDN YASVRRENRE LKLEVARMRM RLTDLEKDHV SMKQELVKSH PANKLFKSFT KKLSKLNALF RIRDLKPIVG KANSESRLLF
501: QKRRRRSVS

Best Arabidopsis Sequence Match ( AT1G03010.2 )
(BLAST)

001: MEFKPISDVS SDLTVQVGSS SFCLHKFPLV SRSGKIRKLL ADPKISNVCL SNAPGGSEAF ELAAKFCYGI NIEINLLNIA KLRCASHYLE MTEDFSEENL
101: ASKTEHFLKE TIFPSILNSI IVLHHCETLI PVSEDLNLVN RLIIAVANNA CKEQLTSGLL KLDYSFSGTN IEPQTPLDWW GKSLAVLNLD FFQRVISAVK
201: SKGLIQDVIS KILISYTNKS LQGLIVRDPK LEKERVLDSE GKKKQRLIVE TIVRLLPTQG RRSSVPMAFL SSLLKMVIAT SSSASTGSCR SDLERRIGLQ
301: LDQAILEDVL IPINLNGTNN TMYDIDSILR IFSIFLNLDE DDEEEEHHHL QFRDETEMIY DFDSPGSPKQ SSILKVSKLM DNYLAEIAMD PNLTTSKFIA
401: LAELLPDHAR IISDGLYRAV DIYLKVHPNI KDSERYRLCK TIDSQKLSQE ACSHAAQNER LPVQMAVQVL YFEQIRLRNA MSSSIGPTQF LFNSNCHQFP
501: QRSGSGAGSG AISPRDNYAS VRRENRELKL EVARMRMRLT DLEKDHISIK QELVKSNPGT KLFKSFAKKI SKLNSLFSFS SLKPSLSGKA SSESRFLFQR
601: KRRHSVS

Arabidopsis Description

BTB/POZ domain-containing protein At1g03010 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA69]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.