Factsheet for PGSC0003DMT400047866

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013570.2.1	Tomato	nucleus	90.45	93.11
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	77.07	76.83
KRH45579	Soybean	nucleus	74.36	73.66
CDY72257	Canola	cytosol	59.24	73.52
CDY72267	Canola	cytosol	59.24	73.52
KRH74516	Soybean	cytosol	71.82	73.33
KRG99441	Soybean	cytosol	73.25	72.78
KRH69640	Soybean	cytosol	73.25	72.33
AT1G67900.2	Thale cress	nucleus	71.02	70.68
Bra004064.1-P	Field mustard	cytosol	68.63	68.52
GSMUA_Achr10P...	Banana	cytosol	57.32	63.94
GSMUA_Achr8P16390_001	Banana	cytosol	46.34	55.75
CDY13635	Canola	cytosol	50.32	55.05
Bra025208.1-P	Field mustard	cytosol	50.32	55.05
CDX83620	Canola	cytosol	47.93	55.03
AT3G26490.3	Thale cress	cytosol	50.16	53.57
TraesCS6A01G208800.2	Wheat	cytosol	48.89	48.96
TraesCS6D01G192300.1	Wheat	cytosol	48.73	48.8
TraesCS6B01G237800.1	Wheat	cytosol	48.57	48.72
HORVU6Hr1G053490.2	Barley	cytosol	48.41	48.48
Zm00001d017079_P001	Maize	cytosol	47.93	48.24
EES05363	Sorghum	cytosol, nucleus, plastid	48.89	47.74
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	47.13	47.21
Zm00001d003297_P001	Maize	mitochondrion	45.54	46.43
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	45.7	45.77
EES10995	Sorghum	mitochondrion	46.18	44.34
PGSC0003DMT400013928	Potato	cytosol	42.83	44.1
PGSC0003DMT400066161	Potato	cytosol	43.95	44.09
PGSC0003DMT400064174	Potato	cytosol	43.79	43.79
PGSC0003DMT400022573	Potato	cytosol	42.04	42.93
PGSC0003DMT400038537	Potato	cytosol	41.88	41.95
PGSC0003DMT400083737	Potato	cytosol	37.1	35.36
PGSC0003DMT400006173	Potato	cytosol	37.42	34.76
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	32.17	33.11
PGSC0003DMT400093531	Potato	cytosol	28.18	32.9
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	32.8	32.75
PGSC0003DMT400003100	Potato	cytosol	30.25	31.72
PGSC0003DMT400018688	Potato	cytosol	31.21	31.31
PGSC0003DMT400045508	Potato	cytosol	30.25	31.3
PGSC0003DMT400033866	Potato	cytosol	29.78	31.11
PGSC0003DMT400026008	Potato	cytosol	32.32	30.8
PGSC0003DMT400010359	Potato	cytosol	28.18	30.62
PGSC0003DMT400001154	Potato	cytosol	29.94	29.79
PGSC0003DMT400031245	Potato	cytosol	26.43	28.82
PGSC0003DMT400073584	Potato	cytosol	25.32	28.7
PGSC0003DMT400029528	Potato	cytosol	23.09	28.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400047866	EnsemblPlantsGene:PGSC0003DMG401018603	EntrezGene:102580786	Gene3D:3.30.710.10	InterPro:IPR027356	InterPro:NPH3_dom
InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR32370	PANTHER:PTHR32370:SF9	PFAM:PF03000	PFscan:PS51649	PGSC:PGSC0003DMG401018603
RefSeq:XP_006357600.1	SEG:seg	SUPFAM:SSF54695	UniParc:UPI000295198D	UniProt:M1BLK0	MapMan:35.1

Description

Signal transducer [Source:PGSC_GENE;Acc:PGSC0003DMG401018603]

Coordinates

chr5:-:10418735..10422776

Molecular Weight (calculated)

70277.7 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.250

Length

628 amino acids

Sequence
(BLAST)

001: MKFMKLGSRP DTFITTEAVR SVNSEVVSDL IVQVKGSRYL LHKFPLLSKC SRLQRLCSES PETSQHQIVQ LPDFPGGIEA FELCAKFCYG ITITLSAYNI
101: VAARCAAEYL QMTEDVEKGN LIYKLEVFFN SCILSGWKDS IVTLQSTKSY PLWSEDLVIT SRCIEAIASK VLAHPSKVNL SRTYSRRGPR DDISCIESDS
201: RRHNKDSSKI WWAEDLAELS IDLYWRSMIA IKSGGKVPAP VIGDALRIYA SRWLPNISKY ANLEKQIVHD QSESDSIGKH RLLLESIISL LPAEKGAVSC
301: SFLLKLLKAT NILKGSCSSK MELARRVGLQ LEDASVNDLL IPCVSHTCDT IYDVDIVITI LQQFMLQVQS PPTSPLRRRG DFERRRSRSA ENIDLEFQES
401: RRSSSASHSS KLKVAKLVDG YLQEIASDTN LPLSKFISIA EAIPGFARLD HDDLYKAIDI YLKGHPGLNK NERKRLCRIL DCKKLSMDVC MHAAQNELLP
501: LRVVVQVLFF EQARTAMSGG HVTELPSNIK ALLANHDDTA KTSASFNKAK MTPVNDQWSN ASGLKSPKSN ISTLKMKLAE DDDLDEHNAD EIGKSSRIKA
601: LCVLPNRPKK MFSKLWSNNR SSVASEKN

Best Arabidopsis Sequence Match ( AT1G67900.4 )
(BLAST)

001: MKFMKLGSRP DTFYTSEDLR CVSSEVSSDF TIEVSGSRYL LHKFPLLSKC LRLQRMCSES PESIIQLPEF PGGVEAFELC AKFCYGITIT ISAYNIVAAR
101: CAAEYLQMSE EVEKGNLVYK LEVFFNSCIL NGWRDSIVTL QTTKAFPLWS EDLAITSRCI EAIASKVLSH PSKVSLSHSH SRRVRDDDMS SNRAAASSRG
201: WWAEDIAELG IDLYWRTMIA IKSGGKVPAS LIGDALRVYA SKWLPTLQRN RKVVKKKEDS DSDSDTDTSS KHRLLLESII SLLPAEKGAV SCSFLLKLLK
301: AANILNASTS SKMELARRVA LQLEEATVSD LLIPPMSYKS ELLYDVDIVA TILEQFMVQG QTSPPTSPLR GKKGMMDRRR RSRSAENIDL EFQESRRSSS
401: ASHSSKLKVA KLVDGYLQQI ARDVNLPLSK FVTLAESVPE FSRLDHDDLY RAIDIYLKAH KNLNKSERKR VCRVLDCKKL SMEACMHAAQ NEMLPLRVVV
501: QVLFYEQARA AAATNNGEKN TTELPSNIKA LLAAHNIDPS NPNAAAFSTT TSIAAPEDRW SVSGLKSPKS KLSGTLRSKL AEDEEVDERF MNGDGGRTPS
601: RFKAFCAIPG RPKKMFSKLL SINRNSSDKN C

Arabidopsis Description

BTB/POZ domain-containing protein At1g67900 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.