Factsheet for PGSC0003DMT400045367

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093531	Potato	cytosol	68.03	77.14
VIT_08s0040g01800.t01	Wine grape	cytosol	67.87	66.35
KRH21111	Soybean	cytosol	62.79	62.68
KRH19874	Soybean	cytosol	60.49	62.65
CDY10395	Canola	cytosol	55.41	62.25
KRH32482	Soybean	cytosol	60.0	62.14
AT5G03250.1	Thale cress	cytosol	59.67	61.49
CDX70320	Canola	cytosol	57.21	61.01
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	50.33	60.79
CDX80858	Canola	cytosol	58.03	60.2
Bra005737.1-P	Field mustard	cytosol	57.87	60.03
CDY11245	Canola	cytosol	57.87	59.03
GSMUA_AchrUn_...	Banana	cytosol	40.66	58.35
GSMUA_Achr2P02890_001	Banana	cytosol	52.46	56.74
CDY72506	Canola	cytosol	11.31	54.33
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	55.41	53.74
Zm00001d043271_P001	Maize	cytosol	54.59	51.47
EES03716	Sorghum	cytosol	53.93	50.54
HORVU3Hr1G076740.1	Barley	cytosol	53.11	50.39
Os01t0780600-01	Rice	plasma membrane	54.26	50.23
TraesCS3B01G349200.1	Wheat	cytosol	52.79	49.77
TraesCS3A01G317300.1	Wheat	cytosol	52.13	49.0
TraesCS3D01G314000.1	Wheat	cytosol	52.13	48.77
Zm00001d002146_P001	Maize	cytosol	47.7	46.94
Os04t0636500-01	Rice	plasma membrane	49.02	46.43
EES11510	Sorghum	cytosol	47.21	45.28
TraesCS2B01G557300.2	Wheat	cytosol	46.72	44.05
TraesCS2D01G529600.1	Wheat	cytosol	46.07	43.23
TraesCS2A01G526900.1	Wheat	cytosol	45.57	42.64
PGSC0003DMT400001154	Potato	cytosol	40.33	38.99
PGSC0003DMT400026008	Potato	cytosol	41.8	38.7
PGSC0003DMT400045508	Potato	cytosol	35.08	35.26
PGSC0003DMT400003100	Potato	cytosol	34.43	35.06
PGSC0003DMT400083737	Potato	cytosol	36.56	33.84
PGSC0003DMT400006173	Potato	cytosol	37.38	33.73
PGSC0003DMT400038537	Potato	cytosol	34.26	33.33
PGSC0003DMT400022573	Potato	cytosol	33.28	33.01
PGSC0003DMT400064174	Potato	cytosol	33.93	32.96
PGSC0003DMT400010359	Potato	cytosol	31.15	32.87
PGSC0003DMT400047866	Potato	cytosol	33.11	32.17
PGSC0003DMT400029528	Potato	cytosol	26.39	31.63
PGSC0003DMT400066161	Potato	cytosol	32.13	31.31
PGSC0003DMT400033866	Potato	cytosol	30.66	31.11
PGSC0003DMT400018688	Potato	cytosol	31.64	30.83
PGSC0003DMT400031245	Potato	cytosol	28.85	30.56
PGSC0003DMT400013928	Potato	cytosol	30.49	30.49
PGSC0003DMT400073584	Potato	cytosol	26.07	28.7

Protein Annotations

EntrezGene:102594639	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1BHK1	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400017605	PGSC:PGSC0003DMG400017605	EnsemblPlants:PGSC0003DMT400045367	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF41	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0002954F39	RefSeq:XP_006363693.1	SEG:seg	:	:	:

Description

Non-phototropic hypocotyl [Source:PGSC_GENE;Acc:PGSC0003DMG400017605]

Coordinates

chr10:-:52022868..52026926

Molecular Weight (calculated)

68597.7 Da

IEP (calculated)

5.443

GRAVY (calculated)

-0.327

Length

610 amino acids

Sequence
(BLAST)

001: MAFLRLGSKS EAFRREGQAW HCTSGLPSDV TIEIGEMSFY LHKFPLISRS GLLAKLVKDS SNDDVSVSVL QLNDIPGGAK AFELVAKFCY GVKIEITPLN
101: IVSLRCASEY LQMTDEYGET NLIAQTESFL NDVFGNWTDT IKALETCEEV LPHAEELHIV SRCINSLAMK ACTDTKLFNW PVSENGHEDT TDVEVWNGIC
201: TGSKTQPMTD DWWYEDVSFL SLPLYKRLIQ AVEAGGMRPE NVAGAVVFYA KKYIPLMNRQ ASFKDATSHT NKSGSTISTP SEADQRALLE EIMELLPNQK
301: GVTDTRFLLR LLRSAMMLQA SPSCRENLER RVGLQLDQAA LDDLLIPNMG YSVETLYDID CFQRILDHFM SIDQASSAPS PCIMEENQLM EGSTSLTSLT
401: RVANLVDSYL SEVAPDVNYK FPKFQSLAAT IPDFARPLTD GIYRAIDIYL KAHPWLTDSE REQICRLMNC QKLSLEACTH AAQNERLPLR VIVQVLFFEQ
501: LRLRTSISGL FFVSDNLDNS QSTTLHGGNR NTNTANGRGS SIDDMRERVA ELEKECNSMK QEFKKVVKTK KKWNVFCGRK SECDLNSVNP SKLQPQHVNE
601: RKNQKNGSSR

Best Arabidopsis Sequence Match ( AT5G03250.1 )
(BLAST)

001: MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN
101: VVSLRCAAEY LEMTDNYGEG NLVGMTETFL NEVFGNWTDS IKALQTCEEV IDYAEDLHII SRCVDSLAVK ACADPSLFNW PVGGGKNATS GQNTEDESHL
201: WNGISASGKM LQHTGEDWWF DDASFLSLPL FKRLITAIEA RGMKLENIAM AVMYYTRKHV PLMNRQVNMD EQVIETPNPS EEDQKTCLEE IVGLLPSKKG
301: VNPTKFLLRL LQTAMVLHAS QSSRENLERR IGNQLDQAAL VDLLIPNMGY SETLYDVECV LRMIEQFVSS TEQAGIVPSP CIIEEGHLVK DGADLLTPTT
401: LVATLVDGYL AEVAPDVNLK LAKFEAIAAA IPDYARPLDD GVYHAIDVYL KAHPWITDSE REHICRLMNC QKLSLEASTH AAQNERLPLR VIVQVLFFEQ
501: LRLRTSVSGW FFVSENLDNP DNQHGANGGL LKPRGENVRE RVSELEKECM NMKQELHKLV RTKRSWKNFT RKLNFKKKSE CCKPKDQATP AI

Arabidopsis Description

BTB/POZ domain-containing protein At5g03250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.