Factsheet for PGSC0003DMT400033866

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064720.2.1	Tomato	cytosol	95.67	95.04
VIT_07s0129g00380.t01	Wine grape	cytosol	68.89	65.09
CDY68489	Canola	cytosol, plastid	48.42	64.81
KRH77099	Soybean	cytosol	65.56	63.75
KRH04469	Soybean	cytosol	61.73	63.64
KRH58066	Soybean	cytosol	62.4	63.56
KRH28386	Soybean	cytosol	65.72	62.7
AT5G67385.1	Thale cress	cytosol	62.4	62.09
CDY12841	Canola	cytosol	61.73	61.53
CDY37857	Canola	cytosol	61.23	61.33
Bra012158.1-P	Field mustard	cytosol	61.23	61.23
CDY57436	Canola	cytosol	61.23	61.03
CDY30615	Canola	cytosol	49.08	59.12
CDY57361	Canola	cytosol	48.59	58.52
Bra031830.1-P	Field mustard	cytosol	53.58	58.33
GSMUA_Achr7P26300_001	Banana	cytosol	56.91	57.77
AT3G49970.2	Thale cress	extracellular	48.92	57.09
Bra036043.1-P	Field mustard	cytosol	49.08	53.83
TraesCS4A01G049300.1	Wheat	cytosol	51.75	51.15
TraesCS4B01G255500.1	Wheat	cytosol	51.41	51.07
TraesCS4D01G255500.1	Wheat	cytosol	51.91	50.98
HORVU4Hr1G069480.3	Barley	cytosol	51.75	50.73
Zm00001d028056_P001	Maize	cytosol	49.75	50.08
Os03t0206700-00	Rice	plasma membrane	51.08	49.04
KXG39906	Sorghum	cytosol	50.08	48.94
PGSC0003DMT400010359	Potato	cytosol	38.27	39.79
PGSC0003DMT400045508	Potato	cytosol	39.43	39.04
PGSC0003DMT400031245	Potato	cytosol	37.27	38.89
PGSC0003DMT400003100	Potato	cytosol	38.6	38.73
PGSC0003DMT400029528	Potato	cytosol	29.78	35.17
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	32.28	30.84
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	31.11	30.66
PGSC0003DMT400022573	Potato	cytosol	31.28	30.57
PGSC0003DMT400093531	Potato	cytosol	27.29	30.48
PGSC0003DMT400026008	Potato	cytosol	33.11	30.2
PGSC0003DMT400047866	Potato	cytosol	31.11	29.78
PGSC0003DMT400083737	Potato	cytosol	32.61	29.74
PGSC0003DMT400006173	Potato	cytosol	32.95	29.29
PGSC0003DMT400066161	Potato	cytosol	29.62	28.43
PGSC0003DMT400013928	Potato	cytosol	28.12	27.7
PGSC0003DMT400001154	Potato	cytosol	28.79	27.42
PGSC0003DMT400038537	Potato	cytosol	28.45	27.27
PGSC0003DMT400018688	Potato	cytosol	27.95	26.84
PGSC0003DMT400064174	Potato	cytosol	27.95	26.75
PGSC0003DMT400073584	Potato	cytosol	23.96	25.99

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1AZU2	InterPro:NPH3_dom	PFAM:PF00651
PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG402013013	PGSC:PGSC0003DMG402013013	EnsemblPlants:PGSC0003DMT400033866	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF14	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002964928
SEG:seg	:	:	:	:	:

Description

Protein binding / signal transducer [Source:PGSC_GENE;Acc:PGSC0003DMG402013013]

Coordinates

chr2:-:22848983..22852953

Molecular Weight (calculated)

67431.5 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.184

Length

601 amino acids

Sequence
(BLAST)

001: MDLGSEQTTQ PSTHVNRKEL LSNVMKRTSE WILSQDIPSD ITIHVGRTSF SLHKFPLVSK CGYIRKLVSK SSDAKLSAIE IPDIPGGAEA FELAAKFCYD
101: INFEINPENI ALIRCVAEYL EMTDEYAVGN LVGLTEAYLN EVGLKSIASS VSILHSSEKL LPIAEDIKLV NRSIDTIAYI VCKDSQYGLN SSTFDWWAED
201: LTVLGIEFFQ RVLIAMMARG FKQYALGPIL TLYAQKSLGG LDISGKGRKQ IEARIEHEKR AVLETIVSLL PREKNALSVS FLSLLLRAAI YLETTVSCRV
301: DLERRMSLQL GQAVLDDVLF PSYSLTGGTF FDVETVKHIM MNFLEYEMVG NRLGINDEEN VFPSASDMEK VGKLMQDYLA EIASDSNLSV SEFISVAEVV
401: PEQLRITEDM MYKAIDMYLK AHPALSDVER KKVCSVMNCQ KLTREACAHA AQNERLPVQI VVQVLYYEQQ RLREVMDVSL VGADPPSRPP KFNWFSSGIS
501: PVTDEVSSLK RENQDLKFEL MKLKMKCREI EKRDDKSAAS TPLGITTPPS DKPRLPRKSF ITAVSRKLGK LYPSFGTDEV TIPSPSKRKN KPSRDRRNSI
601: S

Best Arabidopsis Sequence Match ( AT5G67385.1 )
(BLAST)

001: MSAKKKDLLS SAMKRTSEWI SSQEVSSDVT VHVGEASFSL HKFPLMSKCG FIKKLVSESS KDSDSTVIKI PDIPGGSEAF ELAAKFCYGI NFDMSTENIA
101: MLRCAAEYLE MTEEHSVENL VVRAEAYLNE VALKSLSSSI TVLHKSEKLL PIAERVKLVS RCIDAIAYMT CQESHFCSPS SSNSGNNEVV VQQQSKQPVV
201: DWWAEDLTVL RIDSFQRVLI AMMARGFKQY GLGPVLMLYA QKSLRGLEIF GKGMKKIEPK QEHEKRVILE TIVSLLPREK NAMSVSFLSM LLRAAIFLET
301: TVACRLDLEN RMGLQLGQAV LDDLLIPSYS FTGDHSMFDT DTVQRILMNY LEFEVEGVRL SNNGVDLAGD MERVGKLLEN YMAEIASDRN VSLQKFIGLA
401: ELIPEQSRVT EDGMYRAVDI YLKAHPNMSD VERKKVCSLM DCQKLSREAC AHAAQNDRLP VQTIVQVLYY EQQRLRGEVT NDSDSPAPPP PQPAAVLPPK
501: LSSYTDELSK LKRENQDLKL ELLKMKMKLK EFEKESEKKT SSSTISTNPS SPISTASTGK PPLPRKSFIN SVSKKLGKLN PFSITPYNGR GRTKPPKDRR
601: HSIS

Arabidopsis Description

SR1IP1BTB/POZ domain-containing protein At5g67385 [Source:UniProtKB/Swiss-Prot;Acc:Q66GP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.