Factsheet for PGSC0003DMT400031245

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009345
PGSC0003DMT400036764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	PGSC0003DMT400009345	AT5G66280.1	21798944
AT2G30520.1	PGSC0003DMT400036764	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043130.2.1	Tomato	cytosol	98.26	98.26
VIT_06s0004g08230.t01	Wine grape	mitochondrion	79.69	80.24
KRG98106	Soybean	cytosol	73.09	73.47
KRH30675	Soybean	cytosol	27.6	71.95
CDY10743	Canola	cytosol	70.66	70.05
Bra018309.1-P	Field mustard	cytosol, plastid	71.88	70.05
CDY02075	Canola	cytosol	70.31	69.83
AT2G30520.1	Thale cress	cytosol	71.7	69.65
KRH17211	Soybean	cytosol	69.62	69.26
KRH72843	Soybean	cytosol	69.62	69.14
CDY23992	Canola	cytosol	67.19	68.5
CDX84827	Canola	cytosol	66.84	68.14
Bra022805.1-P	Field mustard	cytosol	67.88	68.0
KRH30676	Soybean	plastid	32.47	65.61
GSMUA_Achr11P...	Banana	cytosol, plastid	54.86	54.58
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	56.42	54.17
TraesCS4A01G192900.1	Wheat	cytosol	45.83	46.98
TraesCS4B01G122300.1	Wheat	cytosol, plastid	46.35	46.76
TraesCS4D01G120400.1	Wheat	cytosol, plastid	45.83	46.23
Os12t0117400-01	Rice	plasma membrane	44.44	44.91
Zm00001d005051_P001	Maize	cytosol	44.62	44.54
HORVU4Hr1G023260.3	Barley	cytosol, plastid	45.49	41.85
OQU82741	Sorghum	plastid	43.4	41.53
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	44.44	41.49
Zm00001d023314_P001	Maize	cytosol	41.67	37.62
PGSC0003DMT400033866	Potato	cytosol	38.89	37.27
PGSC0003DMT400010359	Potato	cytosol	37.15	37.02
PGSC0003DMT400045508	Potato	cytosol	38.19	36.24
PGSC0003DMT400003100	Potato	cytosol	37.5	36.06
KXG22914	Sorghum	plastid	42.53	34.31
PGSC0003DMT400026008	Potato	cytosol	35.59	31.11
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	33.68	30.84
PGSC0003DMT400093531	Potato	cytosol	28.3	30.3
PGSC0003DMT400029528	Potato	cytosol	26.74	30.26
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	30.56	28.85
PGSC0003DMT400083737	Potato	cytosol	32.64	28.53
PGSC0003DMT400022573	Potato	cytosol	29.86	27.97
PGSC0003DMT400018688	Potato	cytosol	30.21	27.8
PGSC0003DMT400006173	Potato	cytosol	32.29	27.51
PGSC0003DMT400038537	Potato	cytosol	29.69	27.27
PGSC0003DMT400013928	Potato	cytosol	28.82	27.21
PGSC0003DMT400066161	Potato	cytosol	28.82	26.52
PGSC0003DMT400047866	Potato	cytosol	28.82	26.43
PGSC0003DMT400073584	Potato	cytosol	25.35	26.35
PGSC0003DMT400064174	Potato	cytosol	28.47	26.11
PGSC0003DMT400001154	Potato	cytosol	27.95	25.52

Protein Annotations

EntrezGene:102602517	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1AVE1
InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400011974	PGSC:PGSC0003DMG400011974	EnsemblPlants:PGSC0003DMT400031245
PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002966DB2	RefSeq:XP_006353728.1	SEG:seg	:

Description

BZIP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011974]

Coordinates

chr7:-:41213650..41215957

Molecular Weight (calculated)

64377.8 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.137

Length

576 amino acids

Sequence
(BLAST)

001: MATPLKNTNR LSLAMERTGQ WVFSQEIPTD VIVEVGEANF NLHKFMLVAK SNYIRKLILD TKESDVSRIN LSDIPGGPEM FEKAAKFCYG VNFEITVHNV
101: AALRCAAEYL QMTDKYCDNN LASRTEDFLA QVALTSLSGA LVVLKSCENL LPLAHDLNII QRCVDIAGAK ACVEANFPSR SPPNWWTEEL TILDVAFFER
201: IIVAMKARGA KALTIASAII TYTERSLRDL VRDHSGNNTR LMEPEDSDMR MHQRELLESI VTLLPAEKAA FPINFLCCLL RTAIFLRAAS SCKNELEKRI
301: SAILEHVTVD DLLVLSFTYD GERLFDLESV RRIISGFMEK EKSVAVFKGG DFGDVCTTAM QRVAKTVDAY LGEIATFGDL SISKFNGIAI LVPKGARKAD
401: DDLYRAVDIY LKAHPHLDEI EREKVCSVMD PLKLSHEARV HASQNKRLPV QIVLHALYFD QLKLRSGAAD DTNNNMPEAM ATRNQLQADV SLVKENEVLR
501: TELLKMKMYI ADIQKTTTST QGTSKGGLKK TTFFSSVSKT LGKFNPFKHG SKDTSNIVDD AALDLTKPRR RRFSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.