Factsheet for PGSC0003DMT400009345

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084210.1.1	Tomato	cytosol	98.06	97.78
CDY55090	Canola	cytosol	67.5	89.67
CDY45223	Canola	cytosol	66.67	89.55
CDY65887	Canola	cytosol	66.39	89.18
PGSC0003DMT400036764	Potato	cytosol	87.78	87.05
CDX90659	Canola	cytosol	85.56	85.32
Bra031811.1-P	Field mustard	cytosol	83.89	85.07
Bra012865.1-P	Field mustard	cytosol	85.28	85.04
KRH28781	Soybean	cytosol, mitochondrion, nucleus	86.11	84.93
KRH76673	Soybean	cytosol, nucleus	86.11	84.93
CDY29005	Canola	cytosol	85.0	84.76
CDX77979	Canola	cytosol	84.72	84.72
CDX73745	Canola	cytosol	84.72	84.72
Bra036833.1-P	Field mustard	cytosol	84.72	84.72
CDY33292	Canola	cytosol	84.44	84.44
Bra038888.1-P	Field mustard	cytosol	84.17	84.17
CDY16314	Canola	cytosol	83.89	83.89
AT5G66280.1	Thale cress	cytosol	83.33	83.1
GSMUA_Achr10P...	Banana	cytosol	65.28	82.46
Bra012067.1-P	Field mustard	cytosol	83.61	81.79
AT3G51160.1	Thale cress	cytosol	83.89	80.97
CDX81397	Canola	cytosol	19.72	80.68
TraesCS7A01G077700.1	Wheat	cytosol	61.67	79.0
HORVU1Hr1G083130.2	Barley	cytosol	47.22	77.27
EER89154	Sorghum	cytosol	78.06	75.13
EER87803	Sorghum	cytosol	77.5	74.6
TraesCS7A01G078000.2	Wheat	cytosol	76.94	74.46
Os06t0137700-01	Rice	cytosol	77.22	74.13
Zm00001d045420_P001	Maize	cytosol	76.39	74.12
Zm00001d036091_P001	Maize	plasma membrane	77.5	74.01
TraesCS7D01G073400.1	Wheat	cytosol	76.94	73.67
HORVU7Hr1G018000.2	Barley	cytosol	75.83	73.39
GSMUA_Achr11P...	Banana	cytosol	11.39	73.21
TraesCS4A01G376500.1	Wheat	cytosol	76.67	73.21
CDY30776	Canola	cytosol	59.44	72.79
TraesCS7D01G073300.1	Wheat	cytosol	74.44	72.04
GSMUA_Achr2P02760_001	Banana	cytosol	43.06	71.76
GSMUA_Achr2P02740_001	Banana	cytosol	43.61	63.31
EES03228	Sorghum	plastid	22.78	62.6
HORVU6Hr1G020800.1	Barley	plastid	24.72	55.97
HORVU7Hr1G018100.2	Barley	cytosol	37.78	49.82
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.83	46.72
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	13.06	37.6

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	EntrezGene:102584886	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:M0ZW29	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	EnsemblPlantsGene:PGSC0003DMG400003633	PGSC:PGSC0003DMG400003633	EnsemblPlants:PGSC0003DMT400009345	PANTHER:PTHR43715
SUPFAM:SSF51735	TIGRFAMs:TIGR01472	UniParc:UPI000294C540	RefSeq:XP_006340721.1	:	:

Description

GDP-mannose 4,6-dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400003633]

Coordinates

chr2:+:39580864..39582118

Molecular Weight (calculated)

40695.2 Da

IEP (calculated)

7.169

GRAVY (calculated)

-0.415

Length

360 amino acids

Sequence
(BLAST)

001: MAAENGSTGN SPRSKIALIT GITGQDGSYL TELLISKNYE VHGLIRRSSS FNTQRINHIY IDPHNTYRAK MKLHYADLSD ASSLRRWLDI ILPDEIYNLA
101: AQSHVAVSFE IPDYTADVVA TGALRLLEAL RSHISATGRS HVKYYQAGSS EMFGSTPPPQ SESTPFHPRS PYAVSKCSAH WYTVNYREAY GIFACNGILF
201: NHESPRRGEN FVTRKITRAV GRIKIGLQSK VFLGNLQASR DWGFAGDYVE AMWMMLQQEK PDDYVVATED SHTVEEFLEV AFRYVGLNWK EHVEIDKRYF
301: RPTEVDNLKG DASKATKVLG WKPKVGFEQL VKMMVDEDVE LAKREKVLVD AGYIDAQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.