Factsheet for Bra031811.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55090	Canola	cytosol	76.34	100.0
Bra012067.1-P	Field mustard	cytosol	94.08	90.76
AT5G66280.1	Thale cress	cytosol	92.11	90.58
Bra038888.1-P	Field mustard	cytosol	91.27	90.0
Bra036833.1-P	Field mustard	cytosol	90.99	89.72
Bra012865.1-P	Field mustard	cytosol	90.99	89.47
KRH28781	Soybean	cytosol, mitochondrion, nucleus	87.89	85.48
KRH76673	Soybean	cytosol, nucleus	87.61	85.21
Solyc02g084210.1.1	Tomato	cytosol	86.2	84.76
PGSC0003DMT400009345	Potato	cytosol	85.07	83.89
PGSC0003DMT400036764	Potato	cytosol	84.79	82.92
GSMUA_Achr10P...	Banana	cytosol	66.48	82.81
Solyc03g118270.1.1	Tomato	cytosol	84.51	82.64
VIT_04s0023g03170.t01	Wine grape	cytosol	84.79	80.7
TraesCS7A01G077700.1	Wheat	cytosol	63.66	80.43
HORVU1Hr1G083130.2	Barley	cytosol	49.01	79.09
GSMUA_Achr11P...	Banana	cytosol	11.83	75.0
EER89154	Sorghum	cytosol	78.87	74.87
TraesCS7A01G078000.2	Wheat	cytosol	78.31	74.73
Os06t0137700-01	Rice	cytosol	78.87	74.67
Zm00001d045420_P001	Maize	cytosol	77.75	74.39
EER87803	Sorghum	cytosol	78.03	74.06
Zm00001d036091_P001	Maize	plasma membrane	78.59	74.01
TraesCS7D01G073400.1	Wheat	cytosol	78.31	73.94
TraesCS4A01G376500.1	Wheat	cytosol	78.31	73.74
HORVU7Hr1G018000.2	Barley	cytosol	76.34	72.85
TraesCS7D01G073300.1	Wheat	cytosol	76.06	72.58
GSMUA_Achr2P02760_001	Banana	cytosol	43.38	71.3
EES03228	Sorghum	plastid	23.38	63.36
GSMUA_Achr2P02740_001	Banana	cytosol	43.38	62.1
HORVU6Hr1G020800.1	Barley	plastid	25.92	57.86
HORVU7Hr1G018100.2	Barley	cytosol	38.59	50.18
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	16.9	49.18
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	13.52	38.4

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra031811
EnsemblPlants:Bra031811.1	EnsemblPlants:Bra031811.1-P	InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:M4ESN1
HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735
TIGRFAMs:TIGR01472	UniParc:UPI0002546CB2	:	:	:	:

Description

AT5G66280 (E=5e-194) GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase/ binding / catalytic/ coenzyme binding

Coordinates

chrA02:+:27792250..27793317

Molecular Weight (calculated)

40147.6 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.440

Length

355 amino acids

Sequence
(BLAST)

001: MATPIASEPR KVALVTGITG QDGSYLTEFL LGKGYQVHGL IRRSSNYNTQ RINHIYVDPH NATKALMKLH YADLSDASSL RRWLDVIKPD EVYNLAAQSH
101: VAVSFEIPDY TADVVATGAL RLLEALRSHM ADNGRTVKYY QAGSSEMFGS TPPPQSETTP FHPRSPYAAS KVAAHWYTVN YREAYGLYAC NGILFNHESP
201: RRGENFVTRK ITRALGRIKV GLQTKLFLGN IQASRDWGFA GDYVEAMWLM LQQEKPDDYV VATEESHTVE EFLDVSFGYL GLNWKDHVEI DKRYFRPTEV
301: DNLKGDASKA KELLKWKPKV GFEQLVKMMV DEDLETAKRE KVLVDAGYID AQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.