Factsheet for GSMUA_Achr2P02760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	22.22	85.71
GSMUA_Achr2P02740_001	Banana	cytosol	98.15	85.48
CDX81397	Canola	cytosol	30.09	73.86
GSMUA_Achr10P...	Banana	cytosol	81.94	62.11
CDY55090	Canola	cytosol	66.2	52.77
CDY65887	Canola	cytosol	64.35	51.87
CDY45223	Canola	cytosol	63.89	51.49
PGSC0003DMT400036764	Potato	cytosol	73.15	43.53
Bra031811.1-P	Field mustard	cytosol	71.3	43.38
Solyc03g118270.1.1	Tomato	cytosol	72.69	43.25
PGSC0003DMT400009345	Potato	cytosol	71.76	43.06
CDX90659	Canola	cytosol	71.76	42.94
Bra012865.1-P	Field mustard	cytosol	71.76	42.94
Solyc02g084210.1.1	Tomato	cytosol	71.76	42.94
KRH76673	Soybean	cytosol, nucleus	72.22	42.74
KRH28781	Soybean	cytosol, mitochondrion, nucleus	72.22	42.74
CDY29005	Canola	cytosol	71.3	42.66
VIT_04s0023g03170.t01	Wine grape	cytosol	73.61	42.63
CDX77979	Canola	cytosol	70.83	42.5
Bra036833.1-P	Field mustard	cytosol	70.83	42.5
CDY33292	Canola	cytosol	70.37	42.22
CDY16314	Canola	cytosol	70.37	42.22
CDX73745	Canola	cytosol	70.37	42.22
Bra038888.1-P	Field mustard	cytosol	70.37	42.22
AT5G66280.1	Thale cress	cytosol	69.91	41.83
Bra012067.1-P	Field mustard	cytosol	70.37	41.3
AT3G51160.1	Thale cress	cytosol	69.44	40.21
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	21.3	37.7
CDY30776	Canola	cytosol	33.33	24.49
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	0.0	0.0

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:GDP_Man_deHydtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008446
GO:GO:0009987	GO:GO:0019673	EnsemblPlantsGene:GSMUA_Achr2G02760_001	EnsemblPlants:GSMUA_Achr2P02760_001	EnsemblPlants:GSMUA_Achr2T02760_001	UniProt:M0S4L7
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735	UniParc:UPI000296F380

Description

GDP-mannose 4,6 dehydratase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G02760_001]

Coordinates

chr2:-:8464841..8466100

Molecular Weight (calculated)

24503.1 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.358

Length

216 amino acids

Sequence
(BLAST)

001: MPGERRKVAL ITGITGQDGS YLTEFLLGNG YEVAAHWYTV NYREAYGLFA CNGILFNHES PRRGENFVTR KITRAVGRIR LGLQTKVFLG NLSAARDWGF
101: AGDYVEAMWM MLQQEEPGDY VVATEESHTV EEFLQAAFSY VGLDWKDHVV IDPRYFRPAE VDSLKGDSTK ARRALGWKPK VGFQDLVKMM VDHDIETAKR
201: EKVLVDAGYI DAQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.