Factsheet for GSMUA_Achr2P02740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P02760_001	Banana	cytosol	85.48	98.15
GSMUA_Achr11P...	Banana	cytosol	19.76	87.5
CDX81397	Canola	cytosol	26.21	73.86
GSMUA_Achr10P...	Banana	cytosol	72.18	62.81
CDY55090	Canola	cytosol	57.26	52.4
CDY65887	Canola	cytosol	55.65	51.49
CDY45223	Canola	cytosol	55.65	51.49
PGSC0003DMT400036764	Potato	cytosol	64.52	44.08
Solyc03g118270.1.1	Tomato	cytosol	64.11	43.8
PGSC0003DMT400009345	Potato	cytosol	63.31	43.61
KRH76673	Soybean	cytosol, nucleus	64.11	43.56
KRH28781	Soybean	cytosol, mitochondrion, nucleus	64.11	43.56
Solyc02g084210.1.1	Tomato	cytosol	63.31	43.49
VIT_04s0023g03170.t01	Wine grape	cytosol	65.32	43.43
Bra031811.1-P	Field mustard	cytosol	62.1	43.38
CDX90659	Canola	cytosol	62.9	43.21
Bra012865.1-P	Field mustard	cytosol	62.9	43.21
CDY33292	Canola	cytosol	62.5	43.06
CDY16314	Canola	cytosol	62.5	43.06
CDX77979	Canola	cytosol	62.5	43.06
Bra038888.1-P	Field mustard	cytosol	62.5	43.06
Bra036833.1-P	Field mustard	cytosol	62.5	43.06
CDY29005	Canola	cytosol	62.5	42.94
CDX73745	Canola	cytosol	62.1	42.78
AT5G66280.1	Thale cress	cytosol	61.69	42.38
Bra012067.1-P	Field mustard	cytosol	61.29	41.3
AT3G51160.1	Thale cress	cytosol	60.89	40.48
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	18.55	37.7
CDY30776	Canola	cytosol	29.03	24.49
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr2P02740_001	EnsemblPlants:GSMUA_Achr2T02740_001	EnsemblPlantsGene:GSMUA_Achr2G02740_001	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673
InterPro:GDP_Man_deHydtase	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	PANTHER:PTHR43715
PFAM:PF16363	SUPFAM:SSF51735	UniParc:UPI00029522CC	UniProt:M0S4L5	MapMan:3.13.2.1.1	:

Description

GDP-mannose 4,6 dehydratase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G02740_001]

Coordinates

chr2:+:8442915..8444054

Molecular Weight (calculated)

27919.0 Da

IEP (calculated)

5.977

GRAVY (calculated)

-0.441

Length

248 amino acids

Sequence
(BLAST)

001: MASHESANDV DRREDKRDSD GGSVATNVVP RPIPGERRKV ALITGITGQD GSYLTEFLLG NGYEVAAHWY TVNYREAYGL FACNGILFNH ESPRRGENFV
101: TRKITRAVGR IRLGLQTKVF LGNLSAARDW GFAGDYVEAM WMMLQQEEPG DYVVATEESH TVEEFLQAAF SYVGLNWKDH VVIDPRYFRP AEVDSLKGDS
201: TKARKALGWK PKVGFQDLVK MMVDHDIEIA KREKVLVDAG YIDAQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.