Factsheet for GSMUA_Achr11P06940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81397	Canola	cytosol	58.93	37.5
GSMUA_Achr2P02760_001	Banana	cytosol	85.71	22.22
GSMUA_Achr2P02740_001	Banana	cytosol	87.5	19.76
GSMUA_Achr10P...	Banana	cytosol	91.07	17.89
CDY55090	Canola	cytosol	73.21	15.13
CDY65887	Canola	cytosol	67.86	14.18
CDY45223	Canola	cytosol	67.86	14.18
CDY30776	Canola	cytosol	64.29	12.24
Bra031811.1-P	Field mustard	cytosol	75.0	11.83
Bra012067.1-P	Field mustard	cytosol	75.0	11.41
Bra038888.1-P	Field mustard	cytosol	73.21	11.39
PGSC0003DMT400009345	Potato	cytosol	73.21	11.39
CDY16314	Canola	cytosol	73.21	11.39
CDY33292	Canola	cytosol	73.21	11.39
CDX90659	Canola	cytosol	73.21	11.36
CDY29005	Canola	cytosol	73.21	11.36
Solyc02g084210.1.1	Tomato	cytosol	73.21	11.36
Bra012865.1-P	Field mustard	cytosol	73.21	11.36
PGSC0003DMT400036764	Potato	cytosol	73.21	11.29
Solyc03g118270.1.1	Tomato	cytosol	73.21	11.29
VIT_04s0023g03170.t01	Wine grape	cytosol	75.0	11.26
KRH76673	Soybean	cytosol, nucleus	73.21	11.23
CDX77979	Canola	cytosol	71.43	11.11
CDX73745	Canola	cytosol	71.43	11.11
Bra036833.1-P	Field mustard	cytosol	71.43	11.11
AT5G66280.1	Thale cress	cytosol	71.43	11.08
AT3G51160.1	Thale cress	cytosol	73.21	10.99
KRH28781	Soybean	cytosol, mitochondrion, nucleus	71.43	10.96
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	8.93	4.1

Protein Annotations

EnsemblPlants:GSMUA_Achr11P06940_001	EnsemblPlants:GSMUA_Achr11T06940_001	EnsemblPlantsGene:GSMUA_Achr11G06940_001	Gene3D:3.90.25.10	UniParc:UPI000296AF23	UniProt:M0RQ24
MapMan:35.1	:	:	:	:	:

Description

GDP-mannose 4,6 dehydratase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G06940_001]

Coordinates

chr11:-:5447186..5447356

Molecular Weight (calculated)

6482.7 Da

IEP (calculated)

4.226

GRAVY (calculated)

-0.614

Length

56 amino acids

Sequence
(BLAST)

1: MDPKYFRPAE VDSLRGDSTK VEFQELVKMM VDHDLEIAER EKVLVDAGYI DAQQQP

Best Arabidopsis Sequence Match ( AT3G51160.1 )
(BLAST)

001: MASENNGSRS DSESITAPKA DSTVVEPRKI ALITGITGQD GSYLTEFLLG KGYEVHGLIR RSSNFNTQRI NHIYIDPHNV NKALMKLHYA DLTDASSLRR
101: WIDVIKPDEV YNLAAQSHVA VSFEIPDYTA DVVATGALRL LEAVRSHTID SGRTVKYYQA GSSEMFGSTP PPQSETTPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RALGRIKVGL QTKLFLGNLQ ASRDWGFAGD YVEAMWLMLQ QEKPDDYVVA TEEGHTVEEF LDVSFGYLGL
301: NWKDYVEIDQ RYFRPAEVDN LQGDASKAKE VLGWKPQVGF EKLVKMMVDE DLELAKREKV LVDAGYMDAK QQP

Arabidopsis Description

MUR1MUR_1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.