Factsheet for Bra012865.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90659	Canola	cytosol	99.45	99.45
Bra036833.1-P	Field mustard	cytosol	95.57	95.83
Bra038888.1-P	Field mustard	cytosol	93.91	94.17
Bra031811.1-P	Field mustard	cytosol	89.47	90.99
AT3G51160.1	Thale cress	cytosol	93.07	90.08
Bra012067.1-P	Field mustard	cytosol	89.47	87.77
PGSC0003DMT400036764	Potato	cytosol	86.43	85.95
Solyc03g118270.1.1	Tomato	cytosol	86.15	85.67
Solyc02g084210.1.1	Tomato	cytosol	85.6	85.6
KRH28781	Soybean	cytosol, mitochondrion, nucleus	86.43	85.48
PGSC0003DMT400009345	Potato	cytosol	85.04	85.28
KRH76673	Soybean	cytosol, nucleus	85.87	84.93
VIT_04s0023g03170.t01	Wine grape	cytosol	86.43	83.65
GSMUA_Achr10P...	Banana	cytosol	65.65	83.16
TraesCS7A01G077700.1	Wheat	cytosol	62.88	80.78
HORVU1Hr1G083130.2	Barley	cytosol	47.65	78.18
TraesCS7A01G078000.2	Wheat	cytosol	78.67	76.34
TraesCS7D01G073400.1	Wheat	cytosol	78.67	75.53
Os06t0137700-01	Rice	cytosol	78.39	75.47
EER89154	Sorghum	cytosol	78.12	75.4
EER87803	Sorghum	cytosol	77.84	75.13
TraesCS4A01G376500.1	Wheat	cytosol	78.39	75.07
Zm00001d036091_P001	Maize	plasma membrane	78.12	74.8
HORVU7Hr1G018000.2	Barley	cytosol	76.45	74.19
Zm00001d045420_P001	Maize	cytosol	76.18	74.12
TraesCS7D01G073300.1	Wheat	cytosol	76.18	73.92
GSMUA_Achr11P...	Banana	cytosol	11.36	73.21
GSMUA_Achr2P02760_001	Banana	cytosol	42.94	71.76
EES03228	Sorghum	plastid	23.82	65.65
GSMUA_Achr2P02740_001	Banana	cytosol	43.21	62.9
HORVU6Hr1G020800.1	Barley	plastid	25.48	57.86
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	16.9	50.0
HORVU7Hr1G018100.2	Barley	cytosol	37.67	49.82
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	14.4	41.6

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra012865
EnsemblPlants:Bra012865.1	EnsemblPlants:Bra012865.1-P	InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:M4D8Q5
HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735
TIGRFAMs:TIGR01472	UniParc:UPI00025406D5	:	:	:	:

Description

AT5G66280 (E=1e-193) GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase/ binding / catalytic/ coenzyme binding

Coordinates

chrA03:-:21874050..21875135

Molecular Weight (calculated)

40743.2 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.444

Length

361 amino acids

Sequence
(BLAST)

001: MASENNGSRS DVEMPRKIAL VTGITGQDGS YLTEFLLSKG YEVHGLIRRS SNFNTQRINH IYIDPHNADK ALMKLHYADL TDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHTADTG RTVKYYQAGS SEMFGATPPP QSETTPFHPR SPYAASKVAA HWYTVNYREA YGLFACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQR KLFLGNLQAS RDWGFAGDYV EAMWMMLQQE AADDYVVATE ESHTVEEFLE ASFGYLGLNW KDHVEIDKRY
301: FRPSEVDNLK GDASKAKQVL GWKPKVGFEK LVKMMVDEDL ELAKREKVLV DAGYMDAQQQ P

Best Arabidopsis Sequence Match ( AT3G51160.1 )
(BLAST)

001: MASENNGSRS DSESITAPKA DSTVVEPRKI ALITGITGQD GSYLTEFLLG KGYEVHGLIR RSSNFNTQRI NHIYIDPHNV NKALMKLHYA DLTDASSLRR
101: WIDVIKPDEV YNLAAQSHVA VSFEIPDYTA DVVATGALRL LEAVRSHTID SGRTVKYYQA GSSEMFGSTP PPQSETTPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RALGRIKVGL QTKLFLGNLQ ASRDWGFAGD YVEAMWLMLQ QEKPDDYVVA TEEGHTVEEF LDVSFGYLGL
301: NWKDYVEIDQ RYFRPAEVDN LQGDASKAKE VLGWKPQVGF EKLVKMMVDE DLELAKREKV LVDAGYMDAK QQP

Arabidopsis Description

MUR1MUR_1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.