CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
golgi 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28781	Soybean	cytosol, mitochondrion, nucleus	97.81	97.81
CDY45223	Canola	cytosol	67.4	91.79
CDY65887	Canola	cytosol	66.3	90.3
CDY55090	Canola	cytosol	66.85	90.04
PGSC0003DMT400036764	Potato	cytosol	87.4	87.88
Bra031811.1-P	Field mustard	cytosol	85.21	87.61
Solyc03g118270.1.1	Tomato	cytosol	87.12	87.6
Bra038888.1-P	Field mustard	cytosol	86.03	87.22
CDY33292	Canola	cytosol	86.03	87.22
Solyc02g084210.1.1	Tomato	cytosol	86.03	86.98
CDY16314	Canola	cytosol	85.75	86.94
VIT_04s0023g03170.t01	Wine grape	cytosol	88.49	86.6
CDY29005	Canola	cytosol	85.48	86.43
CDX77979	Canola	cytosol	85.21	86.39
CDX73745	Canola	cytosol	85.21	86.39
Bra036833.1-P	Field mustard	cytosol	85.21	86.39
CDX90659	Canola	cytosol	85.21	86.15
PGSC0003DMT400009345	Potato	cytosol	84.93	86.11
AT5G66280.1	Thale cress	cytosol	84.93	85.87
Bra012865.1-P	Field mustard	cytosol	84.93	85.87
Bra012067.1-P	Field mustard	cytosol	85.75	85.05
GSMUA_Achr10P...	Banana	cytosol	66.03	84.56
TraesCS7A01G077700.1	Wheat	cytosol	63.84	82.92
AT3G51160.1	Thale cress	cytosol	84.38	82.57
CDX81397	Canola	cytosol	19.73	81.82
HORVU1Hr1G083130.2	Barley	cytosol	48.49	80.45
Os06t0137700-01	Rice	cytosol	81.37	79.2
EER89154	Sorghum	cytosol	80.82	78.88
TraesCS7A01G078000.2	Wheat	cytosol	80.0	78.49
TraesCS7D01G073400.1	Wheat	cytosol	80.27	77.93
EER87803	Sorghum	cytosol	79.73	77.81
TraesCS4A01G376500.1	Wheat	cytosol	80.0	77.45
Zm00001d045420_P001	Maize	cytosol	78.63	77.36
Zm00001d036091_P001	Maize	plasma membrane	79.73	77.19
HORVU7Hr1G018000.2	Barley	cytosol	78.36	76.88
TraesCS7D01G073300.1	Wheat	cytosol	78.36	76.88
CDY30776	Canola	cytosol	60.27	74.83
GSMUA_Achr11P...	Banana	cytosol	11.23	73.21
GSMUA_Achr2P02760_001	Banana	cytosol	42.74	72.22
EES03228	Sorghum	plastid	23.56	65.65
GSMUA_Achr2P02740_001	Banana	cytosol	43.56	64.11
HORVU6Hr1G020800.1	Barley	plastid	25.21	57.86
HORVU7Hr1G018100.2	Barley	cytosol	38.36	51.28
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.62	46.72
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	14.79	43.2

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	EntrezGene:100777692	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
EMBL:ACUP02000635	InterPro:GDP_Man_deHydtase	EnsemblPlantsGene:GLYMA_01G167500	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:I1J8M6
EnsemblPlants:KRH76673	ProteinID:KRH76673	ProteinID:KRH76673.1	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF16363	PANTHER:PTHR43715	MetaCyc:PWY-5738	MetaCyc:PWY-5739	MetaCyc:PWY-5740	MetaCyc:PWY-66
MetaCyc:PWY-7573	SUPFAM:SSF51735	TIGRFAMs:TIGR01472	UniParc:UPI0002336B98	:	:

Description

hypothetical protein

Coordinates

chr1:+:50521638..50523107

Molecular Weight (calculated)

40992.5 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.394

Length

365 amino acids

Sequence
(BLAST)

001: MENTEGSGSA TNGVLAPPRK VALITGITGQ DGSYLTEFLL DKGYEVHGLI RRSSNFNTQR IDHIYVDPHN AHKARMKLHY ADLSDASSLR RWLDTILPDE
101: VYNLAAQSHV AVSFEIPDYT ADVVATGALR LLEAVRSHIS ASGRSHIRYY QAGSSEMFGA TPPPQSETTP FHPRSPYAAS KCAAHWYTVN YREAYSLFAC
201: NGILFNHESP RRGENFVTRK ITRAVGRIKV GLQSKLFLGN LQASRDWGFA GDYVEAMWLM LQQDKPDDYV VATEESHTVE EFLEVAFGYV GLNWRDHVVI
301: DKRYFRPAEV DNLKGDASKA KKVLGWKPKV GFEQLVKMMV DQDIEMAKKE KVLVDAGYID AQQQP

Best Arabidopsis Sequence Match ( AT3G51160.1 )
(BLAST)

001: MASENNGSRS DSESITAPKA DSTVVEPRKI ALITGITGQD GSYLTEFLLG KGYEVHGLIR RSSNFNTQRI NHIYIDPHNV NKALMKLHYA DLTDASSLRR
101: WIDVIKPDEV YNLAAQSHVA VSFEIPDYTA DVVATGALRL LEAVRSHTID SGRTVKYYQA GSSEMFGSTP PPQSETTPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RALGRIKVGL QTKLFLGNLQ ASRDWGFAGD YVEAMWLMLQ QEKPDDYVVA TEEGHTVEEF LDVSFGYLGL
301: NWKDYVEIDQ RYFRPAEVDN LQGDASKAKE VLGWKPQVGF EKLVKMMVDE DLELAKREKV LVDAGYMDAK QQP

Arabidopsis Description

MUR1MUR_1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.