Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45223 | Canola | cytosol | 70.91 | 95.52 |
| CDY65887 | Canola | cytosol | 70.64 | 95.15 |
| CDY55090 | Canola | cytosol | 71.19 | 94.83 |
| Bra031811.1-P | Field mustard | cytosol | 90.58 | 92.11 |
| Bra012067.1-P | Field mustard | cytosol | 90.86 | 89.13 |
| AT3G51160.1 | Thale cress | cytosol | 90.86 | 87.94 |
| KRH76673 | Soybean | cytosol, nucleus | 85.87 | 84.93 |
| PGSC0003DMT400036764 | Potato | cytosol | 85.32 | 84.85 |
| KRH28781 | Soybean | cytosol, mitochondrion, nucleus | 85.6 | 84.66 |
| Solyc03g118270.1.1 | Tomato | cytosol | 85.04 | 84.57 |
| Solyc02g084210.1.1 | Tomato | cytosol | 83.66 | 83.66 |
| PGSC0003DMT400009345 | Potato | cytosol | 83.1 | 83.33 |
| VIT_04s0023g03170.t01 | Wine grape | cytosol | 85.87 | 83.11 |
| GSMUA_Achr10P... | Banana | cytosol | 65.1 | 82.46 |
| CDX81397 | Canola | cytosol | 19.94 | 81.82 |
| TraesCS7A01G077700.1 | Wheat | cytosol | 62.05 | 79.72 |
| CDY30776 | Canola | cytosol | 63.43 | 77.89 |
| HORVU1Hr1G083130.2 | Barley | cytosol | 47.37 | 77.73 |
| Os06t0137700-01 | Rice | cytosol | 77.84 | 74.93 |
| EER89154 | Sorghum | cytosol | 77.56 | 74.87 |
| TraesCS7A01G078000.2 | Wheat | cytosol | 77.01 | 74.73 |
| Zm00001d045420_P001 | Maize | cytosol | 76.18 | 74.12 |
| EER87803 | Sorghum | cytosol | 76.73 | 74.06 |
| Zm00001d036091_P001 | Maize | plasma membrane | 77.29 | 74.01 |
| TraesCS7D01G073400.1 | Wheat | cytosol | 77.01 | 73.94 |
| TraesCS4A01G376500.1 | Wheat | cytosol | 77.01 | 73.74 |
| HORVU7Hr1G018000.2 | Barley | cytosol | 75.07 | 72.85 |
| TraesCS7D01G073300.1 | Wheat | cytosol | 74.79 | 72.58 |
| GSMUA_Achr11P... | Banana | cytosol | 11.08 | 71.43 |
| GSMUA_Achr2P02760_001 | Banana | cytosol | 41.83 | 69.91 |
| EES03228 | Sorghum | plastid | 23.55 | 64.89 |
| GSMUA_Achr2P02740_001 | Banana | cytosol | 42.38 | 61.69 |
| HORVU6Hr1G020800.1 | Barley | plastid | 25.76 | 58.49 |
| HORVU7Hr1G018100.2 | Barley | cytosol | 37.67 | 49.82 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 16.34 | 48.36 |
| HORVU7Hr1G018110.1 | Barley | mitochondrion, plastid | 14.13 | 40.8 |
Protein Annotations
| KEGG:00051+4.2.1.47 | KEGG:00520+4.2.1.47 | MapMan:3.13.2.1.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EntrezGene:836760 |
| UniProt:A0A178U7H7 | ProteinID:AED98194.1 | EMBL:AF195140 | ArrayExpress:AT5G66280 | EnsemblPlantsGene:AT5G66280 | RefSeq:AT5G66280 |
| TAIR:AT5G66280 | RefSeq:AT5G66280-TAIR-G | EnsemblPlants:AT5G66280.1 | TAIR:AT5G66280.1 | ProteinID:BAB10707.1 | EMBL:BT029230 |
| InterPro:GDP_Man_deHydtase | Symbol:GMD1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008446 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0019673 | GO:GO:0042351 | HAMAP:MF_00955 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| RefSeq:NP_201429.1 | ProteinID:OAO89590.1 | PFAM:PF16363 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009046 | PANTHER:PTHR43715 | UniProt:Q9SNY3 | SUPFAM:SSF51735 |
| TIGRFAMs:TIGR01472 | UniParc:UPI000012B8A4 | : | : | : | : |
Description
GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
Coordinates
chr5:+:26476166..26477754
Molecular Weight (calculated)
40852.5 Da
IEP (calculated)
7.127
GRAVY (calculated)
-0.465
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.