Factsheet for VIT_04s0023g03170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118270.1.1	Tomato	cytosol	88.47	90.91
PGSC0003DMT400036764	Potato	cytosol	88.2	90.63
CDY45223	Canola	cytosol	64.34	89.55
KRH28781	Soybean	cytosol, mitochondrion, nucleus	86.6	88.49
KRH76673	Soybean	cytosol, nucleus	86.6	88.49
CDY65887	Canola	cytosol	63.54	88.43
CDY55090	Canola	cytosol	64.08	88.19
CDX73745	Canola	cytosol	83.91	86.94
CDX77979	Canola	cytosol	83.91	86.94
Bra036833.1-P	Field mustard	cytosol	83.91	86.94
CDX90659	Canola	cytosol	83.91	86.7
CDY29005	Canola	cytosol	83.65	86.43
Bra012865.1-P	Field mustard	cytosol	83.65	86.43
AT5G66280.1	Thale cress	cytosol	83.11	85.87
Bra038888.1-P	Field mustard	cytosol	82.31	85.28
CDY33292	Canola	cytosol	82.31	85.28
CDY16314	Canola	cytosol	82.04	85.0
GSMUA_Achr10P...	Banana	cytosol	64.88	84.91
Bra031811.1-P	Field mustard	cytosol	80.7	84.79
AT3G51160.1	Thale cress	cytosol	83.65	83.65
Bra012067.1-P	Field mustard	cytosol	82.31	83.42
TraesCS7A01G077700.1	Wheat	cytosol	60.86	80.78
CDX81397	Canola	cytosol	18.77	79.55
HORVU1Hr1G083130.2	Barley	cytosol	46.11	78.18
EER89154	Sorghum	cytosol	78.02	77.81
EER87803	Sorghum	cytosol	76.94	76.74
Os06t0137700-01	Rice	cytosol	76.94	76.53
TraesCS7A01G078000.2	Wheat	cytosol	75.87	76.08
Zm00001d045420_P001	Maize	cytosol	75.34	75.74
Zm00001d036091_P001	Maize	plasma membrane	76.41	75.6
CDY30776	Canola	cytosol	59.52	75.51
GSMUA_Achr11P...	Banana	cytosol	11.26	75.0
TraesCS7D01G073400.1	Wheat	cytosol	75.6	75.0
TraesCS4A01G376500.1	Wheat	cytosol	75.6	74.8
TraesCS7D01G073300.1	Wheat	cytosol	73.99	74.19
HORVU7Hr1G018000.2	Barley	cytosol	73.73	73.92
GSMUA_Achr2P02760_001	Banana	cytosol	42.63	73.61
GSMUA_Achr2P02740_001	Banana	cytosol	43.43	65.32
EES03228	Sorghum	plastid	22.79	64.89
HORVU6Hr1G020800.1	Barley	plastid	24.13	56.6
HORVU7Hr1G018100.2	Barley	cytosol	37.0	50.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.82	48.36
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	13.4	40.0

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	EntrezGene:100264358	wikigene:100264358	MapMan:3.13.2.1.1	Gene3D:3.40.50.720
Gene3D:3.90.25.10	EMBL:AM484445	ProteinID:CAN64284	ProteinID:CAN64284.1	ProteinID:CCB44375	ProteinID:CCB44375.1
UniProt:F6GWP0	EMBL:FN594959	InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	EntrezGene:LOC100264358
wikigene:LOC100264358	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715
SUPFAM:SSF51735	TIGR:TC59262	TIGRFAMs:TIGR01472	UniParc:UPI00015CB559	ArrayExpress:VIT_04s0023g03170	EnsemblPlantsGene:VIT_04s0023g03170
EnsemblPlants:VIT_04s0023g03170.t01	unigene:Vvi.14783	RefSeq:XP_002269841	RefSeq:XP_002269841.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:19724114..19725462

Molecular Weight (calculated)

41873.5 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.432

Length

373 amino acids

Sequence
(BLAST)

001: MASEKETAGS GSAAAINGGE ALEPPKRKIA LITGITGQDG SYLTEFLLNK GYEVHGLIRR SSNFNTQRLN HIYIDPHNSH KARMKLHYAD LSDASSLRRW
101: IDTIAPDEVY NLAAQSHVAV SFEIPDYTAD VVATGALRLL EAVRSHIMAT GRSHIRYYQA GSSEMFGSTS PPQSETSPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RAVGRIKIGL QSKLFMGNLQ ASRDWGFAGD YVEAMWMMLQ QEKPDDYVVA TEESHTVEEF LEVAFGSVGL
301: NWRDHVVIDK RYFRPAEVDN LKGDSSKARK VLGWKPKVDF EQLVKMMVDE DIELAKREKV LVDAGYMDAQ QQP

Best Arabidopsis Sequence Match ( AT3G51160.1 )
(BLAST)

001: MASENNGSRS DSESITAPKA DSTVVEPRKI ALITGITGQD GSYLTEFLLG KGYEVHGLIR RSSNFNTQRI NHIYIDPHNV NKALMKLHYA DLTDASSLRR
101: WIDVIKPDEV YNLAAQSHVA VSFEIPDYTA DVVATGALRL LEAVRSHTID SGRTVKYYQA GSSEMFGSTP PPQSETTPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RALGRIKVGL QTKLFLGNLQ ASRDWGFAGD YVEAMWLMLQ QEKPDDYVVA TEEGHTVEEF LDVSFGYLGL
301: NWKDYVEIDQ RYFRPAEVDN LQGDASKAKE VLGWKPQVGF EKLVKMMVDE DLELAKREKV LVDAGYMDAK QQP

Arabidopsis Description

MUR1MUR_1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.