Factsheet for Zm00001d036091_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045420_P001	Maize	cytosol	92.04	93.53
TraesCS7A01G077700.1	Wheat	cytosol	66.31	88.97
Os06t0137700-01	Rice	cytosol	87.53	88.0
TraesCS7A01G078000.2	Wheat	cytosol	86.74	87.9
TraesCS7D01G073400.1	Wheat	cytosol	86.21	86.44
TraesCS4A01G376500.1	Wheat	cytosol	86.21	86.21
HORVU1Hr1G083130.2	Barley	cytosol	50.13	85.91
HORVU7Hr1G018000.2	Barley	cytosol	84.35	85.48
TraesCS7D01G073300.1	Wheat	cytosol	83.55	84.68
CDY65887	Canola	cytosol	58.09	81.72
CDY55090	Canola	cytosol	58.62	81.55
CDY45223	Canola	cytosol	57.82	81.34
KRH76673	Soybean	cytosol, nucleus	77.19	79.73
KRH28781	Soybean	cytosol, mitochondrion, nucleus	76.92	79.45
Bra031811.1-P	Field mustard	cytosol	74.01	78.59
PGSC0003DMT400036764	Potato	cytosol	75.6	78.51
CDY33292	Canola	cytosol	74.8	78.33
Solyc03g118270.1.1	Tomato	cytosol	75.33	78.24
Bra012865.1-P	Field mustard	cytosol	74.8	78.12
CDY16314	Canola	cytosol	74.54	78.06
Bra038888.1-P	Field mustard	cytosol	74.54	78.06
CDY29005	Canola	cytosol	74.54	77.84
CDX90659	Canola	cytosol	74.54	77.84
CDX77979	Canola	cytosol	74.01	77.5
CDX73745	Canola	cytosol	74.01	77.5
Bra036833.1-P	Field mustard	cytosol	74.01	77.5
PGSC0003DMT400009345	Potato	cytosol	74.01	77.5
AT5G66280.1	Thale cress	cytosol	74.01	77.29
Solyc02g084210.1.1	Tomato	cytosol	74.01	77.29
VIT_04s0023g03170.t01	Wine grape	cytosol	75.6	76.41
Bra012067.1-P	Field mustard	cytosol	74.01	75.82
AT3G51160.1	Thale cress	cytosol	74.54	75.34
CDX81397	Canola	cytosol	16.98	72.73
CDY30776	Canola	cytosol	50.66	64.97
HORVU6Hr1G020800.1	Barley	plastid	26.53	62.89
HORVU7Hr1G018100.2	Barley	cytosol	42.97	59.34
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	16.18	50.0

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	UniProt:A0A1D6LKP7
ProteinID:AQK80279.1	InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735	TIGRFAMs:TIGR01472	UniParc:UPI000844BF8C
EnsemblPlantsGene:Zm00001d036091	EnsemblPlants:Zm00001d036091_P001	EnsemblPlants:Zm00001d036091_T001	SEG:seg	:	:

Description

root cap protein1 root cap protein1

Coordinates

chr6:+:71737372..71738505

Molecular Weight (calculated)

41836.5 Da

IEP (calculated)

7.493

GRAVY (calculated)

-0.409

Length

377 amino acids

Sequence
(BLAST)

001: MAHSNGAAAT ATAGGGDMDD ETAPVPRALA PARKVALITG ITGQDGSYLT ELLLSKGYEV HGLIRRSSNF NTQRLDHIYH DPHAVPSAPR PPMRLHYADL
101: SDSSSLRRAL DAISPDEVYN LAAQSHVAVS FEIPDYTADV TATGALRLLE AVRLSRKPMR YYQAGSSEMF GSTPPPQRED TPFHPRSPYA AAKVAAHWYT
201: VNYREAYGVF ACNGVLFNHE SPRRGENFVT RKITRAVGRI KVGLQTRVFL GNLSAARDWG FAGDYVEAMW LMLQQEQPGD YVVATEESHT VEEFLQAAFG
301: YAGLSWKDHV VIDKKYFRPA EVDSLKGDAT KARKVLKWKP KVGFQELVEM MVDHDIELAK KEKVLVDAGY RDPKQQP

Best Arabidopsis Sequence Match ( AT3G51160.1 )
(BLAST)

001: MASENNGSRS DSESITAPKA DSTVVEPRKI ALITGITGQD GSYLTEFLLG KGYEVHGLIR RSSNFNTQRI NHIYIDPHNV NKALMKLHYA DLTDASSLRR
101: WIDVIKPDEV YNLAAQSHVA VSFEIPDYTA DVVATGALRL LEAVRSHTID SGRTVKYYQA GSSEMFGSTP PPQSETTPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RALGRIKVGL QTKLFLGNLQ ASRDWGFAGD YVEAMWLMLQ QEKPDDYVVA TEEGHTVEEF LDVSFGYLGL
301: NWKDYVEIDQ RYFRPAEVDN LQGDASKAKE VLGWKPQVGF EKLVKMMVDE DLELAKREKV LVDAGYMDAK QQP

Arabidopsis Description

MUR1MUR_1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.