CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	37.5	58.93
GSMUA_Achr2P02760_001	Banana	cytosol	73.86	30.09
CDY45223	Canola	cytosol	88.64	29.1
CDY65887	Canola	cytosol	87.5	28.73
CDY55090	Canola	cytosol	87.5	28.41
HORVU1Hr1G083130.2	Barley	cytosol	68.18	27.27
GSMUA_Achr2P02740_001	Banana	cytosol	73.86	26.21
GSMUA_Achr10P...	Banana	cytosol	73.86	22.81
TraesCS7A01G077700.1	Wheat	cytosol	67.05	21.0
CDY29005	Canola	cytosol	82.95	20.22
CDY33292	Canola	cytosol	81.82	20.0
CDY16314	Canola	cytosol	81.82	20.0
CDX77979	Canola	cytosol	81.82	20.0
KRH28781	Soybean	cytosol, mitochondrion, nucleus	82.95	20.0
Solyc02g084210.1.1	Tomato	cytosol	81.82	19.94
AT5G66280.1	Thale cress	cytosol	81.82	19.94
CDY30776	Canola	cytosol	65.91	19.73
KRH76673	Soybean	cytosol, nucleus	81.82	19.73
PGSC0003DMT400009345	Potato	cytosol	80.68	19.72
CDX73745	Canola	cytosol	80.68	19.72
CDX90659	Canola	cytosol	80.68	19.67
Solyc03g118270.1.1	Tomato	cytosol	79.55	19.28
PGSC0003DMT400036764	Potato	cytosol	79.55	19.28
VIT_04s0023g03170.t01	Wine grape	cytosol	79.55	18.77
Zm00001d045420_P001	Maize	cytosol	71.59	16.98
Zm00001d036091_P001	Maize	plasma membrane	72.73	16.98
EER87803	Sorghum	cytosol	71.59	16.84
EER89154	Sorghum	cytosol	71.59	16.84
Os06t0137700-01	Rice	cytosol	70.45	16.53
TraesCS7A01G078000.2	Wheat	cytosol	69.32	16.4
TraesCS7D01G073400.1	Wheat	cytosol	69.32	16.22
TraesCS4A01G376500.1	Wheat	cytosol	69.32	16.18
HORVU7Hr1G018000.2	Barley	cytosol	68.18	16.13
TraesCS7D01G073300.1	Wheat	cytosol	65.91	15.59
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	10.23	7.38
HORVU6Hr1G020800.1	Barley	plastid	0.0	0.0
EES03228	Sorghum	plastid	0.0	0.0
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	0.0	0.0
HORVU7Hr1G018100.2	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX81397	EnsemblPlantsGene:GSBRNA2T00134976001	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673
InterPro:GDP_Man_deHydtase	InterPro:NAD(P)-bd_dom_sf	KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	ncoils:Coil	PANTHER:PTHR43715
ProteinID:CDX81397	ProteinID:CDX81397.1	SUPFAM:SSF51735	UniParc:UPI0004EF0757	MapMan:35.1	:

Description

BnaC09g08080D

Coordinates

chrLK031824:+:1511719..1513625

Molecular Weight (calculated)

10236.2 Da

IEP (calculated)

4.490

GRAVY (calculated)

-0.727

Length

88 amino acids

Sequence
(BLAST)

1: MWLMLQQEKP NDYVVATEES HTVEEFLEAN REVDNLKGDA SKAKELLKWK PKVGFEQPVK MMVDEDLEMA RREKVLVDAG YLDAQQHS

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.