Factsheet for Solyc02g084210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009345	Potato	cytosol	97.78	98.06
CDY55090	Canola	cytosol	67.87	90.41
CDY45223	Canola	cytosol	67.04	90.3
CDY65887	Canola	cytosol	66.76	89.93
Solyc03g118270.1.1	Tomato	cytosol	86.98	86.5
Bra031811.1-P	Field mustard	cytosol	84.76	86.2
KRH28781	Soybean	cytosol, mitochondrion, nucleus	86.98	86.03
KRH76673	Soybean	cytosol, nucleus	86.98	86.03
CDX90659	Canola	cytosol	85.87	85.87
Bra012865.1-P	Field mustard	cytosol	85.6	85.6
CDY29005	Canola	cytosol	85.32	85.32
CDX77979	Canola	cytosol	85.04	85.28
CDX73745	Canola	cytosol	85.04	85.28
Bra036833.1-P	Field mustard	cytosol	85.04	85.28
CDY33292	Canola	cytosol	84.76	85.0
Bra038888.1-P	Field mustard	cytosol	84.49	84.72
CDY16314	Canola	cytosol	84.21	84.44
AT5G66280.1	Thale cress	cytosol	83.66	83.66
GSMUA_Achr10P...	Banana	cytosol	65.1	82.46
Bra012067.1-P	Field mustard	cytosol	83.66	82.07
CDX81397	Canola	cytosol	19.94	81.82
AT3G51160.1	Thale cress	cytosol	84.21	81.5
TraesCS7A01G077700.1	Wheat	cytosol	62.05	79.72
HORVU1Hr1G083130.2	Barley	cytosol	47.37	77.73
EER89154	Sorghum	cytosol	77.84	75.13
EER87803	Sorghum	cytosol	77.29	74.6
TraesCS7A01G078000.2	Wheat	cytosol	76.73	74.46
Os06t0137700-01	Rice	cytosol	77.29	74.4
Zm00001d045420_P001	Maize	cytosol	76.18	74.12
Zm00001d036091_P001	Maize	plasma membrane	77.29	74.01
CDY30776	Canola	cytosol	60.11	73.81
TraesCS7D01G073400.1	Wheat	cytosol	76.73	73.67
HORVU7Hr1G018000.2	Barley	cytosol	75.62	73.39
GSMUA_Achr11P...	Banana	cytosol	11.36	73.21
TraesCS4A01G376500.1	Wheat	cytosol	76.45	73.21
TraesCS7D01G073300.1	Wheat	cytosol	74.52	72.31
GSMUA_Achr2P02760_001	Banana	cytosol	42.94	71.76
GSMUA_Achr2P02740_001	Banana	cytosol	43.49	63.31
EES03228	Sorghum	plastid	22.44	61.83
HORVU6Hr1G020800.1	Barley	plastid	24.65	55.97
HORVU7Hr1G018100.2	Barley	cytosol	37.67	49.82
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.79	46.72
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	12.74	36.8

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:GDP_Man_deHydtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008446
GO:GO:0009987	GO:GO:0019673	UniProt:K4BAT7	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc02g084210.1	EnsemblPlants:Solyc02g084210.1.1	TIGRFAMs:TIGR01472
UniParc:UPI0002768A5E	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:47379981..47381066

Molecular Weight (calculated)

40691.3 Da

IEP (calculated)

7.741

GRAVY (calculated)

-0.415

Length

361 amino acids

Sequence
(BLAST)

001: MAAENGSTGN KNGRSKIALI TGITGQDGSY LTELLISKNY QVHGLIRRSS SFNTQRINHI YIDPHNTCRA KMKLHYADLS DASSLRRWLD IILPDEIYNL
101: AAQSHVAVSF EIPDYTADVV ATGALRLLEA LRSHISATGR SHVKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAVSKCSA HWYTVNYREA YGIFACNGIL
201: FNHESPRRGE NFVTRKITRA VGRIKIGLQS KVFLGNLQAS RDWGFAGDYV EAMWMMLQQE KPDDYVVATE DSHTVEEFLE VAFGYVGLNW KEHVEIDKRY
301: FRPTEVDNLK GDASKAKKVL GWKPKVGFEQ LVKMMVDEDV ELAKREKVLV DAGYIDAQQQ P

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.