CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
golgi 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76673	Soybean	cytosol, nucleus	97.81	97.81
CDY45223	Canola	cytosol	67.95	92.54
CDY65887	Canola	cytosol	66.85	91.04
CDY55090	Canola	cytosol	67.4	90.77
Bra031811.1-P	Field mustard	cytosol	85.48	87.89
PGSC0003DMT400036764	Potato	cytosol	87.4	87.88
Solyc03g118270.1.1	Tomato	cytosol	87.12	87.6
Solyc02g084210.1.1	Tomato	cytosol	86.03	86.98
CDY29005	Canola	cytosol	86.03	86.98
Bra038888.1-P	Field mustard	cytosol	85.75	86.94
CDY33292	Canola	cytosol	85.75	86.94
CDX90659	Canola	cytosol	85.75	86.7
CDY16314	Canola	cytosol	85.48	86.67
CDX77979	Canola	cytosol	85.48	86.67
Bra036833.1-P	Field mustard	cytosol	85.48	86.67
VIT_04s0023g03170.t01	Wine grape	cytosol	88.49	86.6
Bra012865.1-P	Field mustard	cytosol	85.48	86.43
CDX73745	Canola	cytosol	85.21	86.39
PGSC0003DMT400009345	Potato	cytosol	84.93	86.11
Bra012067.1-P	Field mustard	cytosol	86.3	85.6
AT5G66280.1	Thale cress	cytosol	84.66	85.6
GSMUA_Achr10P...	Banana	cytosol	65.48	83.86
CDX81397	Canola	cytosol	20.0	82.95
TraesCS7A01G077700.1	Wheat	cytosol	63.84	82.92
AT3G51160.1	Thale cress	cytosol	84.11	82.31
HORVU1Hr1G083130.2	Barley	cytosol	48.49	80.45
EER89154	Sorghum	cytosol	80.0	78.07
Os06t0137700-01	Rice	cytosol	80.0	77.87
TraesCS7A01G078000.2	Wheat	cytosol	79.18	77.69
TraesCS7D01G073400.1	Wheat	cytosol	79.45	77.13
EER87803	Sorghum	cytosol	78.9	77.01
Zm00001d036091_P001	Maize	plasma membrane	79.45	76.92
Zm00001d045420_P001	Maize	cytosol	78.08	76.82
TraesCS4A01G376500.1	Wheat	cytosol	79.18	76.66
HORVU7Hr1G018000.2	Barley	cytosol	77.53	76.08
TraesCS7D01G073300.1	Wheat	cytosol	77.53	76.08
CDY30776	Canola	cytosol	60.55	75.17
GSMUA_Achr2P02760_001	Banana	cytosol	42.74	72.22
GSMUA_Achr11P...	Banana	cytosol	10.96	71.43
EES03228	Sorghum	plastid	23.29	64.89
GSMUA_Achr2P02740_001	Banana	cytosol	43.56	64.11
HORVU6Hr1G020800.1	Barley	plastid	25.21	57.86
HORVU7Hr1G018100.2	Barley	cytosol	38.36	51.28
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.62	46.72
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	13.97	40.8

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	EntrezGene:100797782	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
EMBL:ACUP02006765	InterPro:GDP_Man_deHydtase	EnsemblPlantsGene:GLYMA_11G075700	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:I1LI05
EnsemblPlants:KRH28781	ProteinID:KRH28781	ProteinID:KRH28781.1	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF16363	PANTHER:PTHR43715	MetaCyc:PWY-5738	MetaCyc:PWY-5739	MetaCyc:PWY-5740	MetaCyc:PWY-66
MetaCyc:PWY-7573	SUPFAM:SSF51735	TIGRFAMs:TIGR01472	UniParc:UPI0002262C86	:	:

Description

hypothetical protein

Coordinates

chr11:-:5667004..5668865

Molecular Weight (calculated)

41149.8 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.393

Length

365 amino acids

Sequence
(BLAST)

001: MENTEGSRSA TNGVLPLARK VALITGITGQ DGSYLTEFLL DKGYEVHGLI RRSSNFNTQR IDHIYVDPHN AHKARMKLHY ADLSDASSLR RWLDTILPDE
101: VYNLAAQSHV AVSFEIPDYT ADVVATGALR LLEAVRSHIA ASGRSHIRYY QAGSSEMFGA TPPPQSETTP FHPRSPYAAS KCAAHWYTVN YREAYSLFAC
201: NGILFNHESP RRGENFVTRK ITRAVGRIKV GLQSKLFLGN LQASRDWGFA GDYVEAMWLM LQQEKPDDYV VATEESHTVE EFLEVAFGYV GLNWRDHVVI
301: DKRYFRPSEV DNLKGDASKA KKVLGWKPKV GFEQLVKMMV DRDIEMAKKE KVLVDAGYID AQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.