Factsheet for PGSC0003DMT400036764

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118270.1.1	Tomato	cytosol	99.72	99.72
CDY45223	Canola	cytosol	65.84	89.18
VIT_04s0023g03170.t01	Wine grape	cytosol	90.63	88.2
CDY55090	Canola	cytosol	65.84	88.19
CDY65887	Canola	cytosol	65.01	88.06
PGSC0003DMT400009345	Potato	cytosol	87.05	87.78
KRH28781	Soybean	cytosol, mitochondrion, nucleus	87.88	87.4
KRH76673	Soybean	cytosol, nucleus	87.88	87.4
Bra012865.1-P	Field mustard	cytosol	85.95	86.43
CDX90659	Canola	cytosol	85.95	86.43
CDY29005	Canola	cytosol	85.67	86.15
Bra036833.1-P	Field mustard	cytosol	85.12	85.83
CDX73745	Canola	cytosol	85.12	85.83
CDX77979	Canola	cytosol	85.12	85.83
AT5G66280.1	Thale cress	cytosol	84.85	85.32
CDY33292	Canola	cytosol	84.3	85.0
CDY16314	Canola	cytosol	84.3	85.0
Bra038888.1-P	Field mustard	cytosol	84.3	85.0
Bra031811.1-P	Field mustard	cytosol	82.92	84.79
GSMUA_Achr10P...	Banana	cytosol	66.39	84.56
Bra012067.1-P	Field mustard	cytosol	84.85	83.7
AT3G51160.1	Thale cress	cytosol	85.67	83.38
TraesCS7A01G077700.1	Wheat	cytosol	62.26	80.43
CDX81397	Canola	cytosol	19.28	79.55
HORVU1Hr1G083130.2	Barley	cytosol	48.21	79.55
EER89154	Sorghum	cytosol	79.34	77.01
EER87803	Sorghum	cytosol	79.06	76.74
Zm00001d045420_P001	Maize	cytosol	78.24	76.55
Os06t0137700-01	Rice	cytosol	78.24	75.73
Zm00001d036091_P001	Maize	plasma membrane	78.51	75.6
TraesCS7A01G078000.2	Wheat	cytosol	76.86	75.0
CDY30776	Canola	cytosol	60.61	74.83
TraesCS7D01G073400.1	Wheat	cytosol	77.14	74.47
TraesCS4A01G376500.1	Wheat	cytosol	76.86	74.01
HORVU7Hr1G018000.2	Barley	cytosol	75.76	73.92
GSMUA_Achr11P...	Banana	cytosol	11.29	73.21
GSMUA_Achr2P02760_001	Banana	cytosol	43.53	73.15
TraesCS7D01G073300.1	Wheat	cytosol	74.93	73.12
GSMUA_Achr2P02740_001	Banana	cytosol	44.08	64.52
EES03228	Sorghum	plastid	23.14	64.12
HORVU6Hr1G020800.1	Barley	plastid	25.34	57.86
HORVU7Hr1G018100.2	Barley	cytosol	38.02	50.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	16.25	48.36
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	12.95	37.6

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	EntrezGene:102580913	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:M1B467	HAMAP:MF_00955	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	EnsemblPlantsGene:PGSC0003DMG400014178	PGSC:PGSC0003DMG400014178	EnsemblPlants:PGSC0003DMT400036764	PANTHER:PTHR43715
SUPFAM:SSF51735	TIGRFAMs:TIGR01472	UniParc:UPI000295D07A	RefSeq:XP_006341477.1	:	:

Description

GDP-mannose 4,6-dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400014178]

Coordinates

chr3:+:57832302..57834616

Molecular Weight (calculated)

41101.5 Da

IEP (calculated)

7.169

GRAVY (calculated)

-0.497

Length

363 amino acids

Sequence
(BLAST)

001: MASDRSESTG DSNGDRRKVA LITGITGQDG SYLTEFLLDK GYEVHGLIRR SSNFNTQRVN HIYIDPHNVH KARMKLHYAD LTDASSLRRW IDTIQPDEVY
101: NLAAQSHVAV SFEIPDYTAD VVATGALRLL EAVRSHISAT GRSNIRYYQA GSSEMFGSTP PPQSESTPFH PRSPYAVSKC AAHWYTVNYR EAYGIFACNG
201: ILFNHESPRR GENFVTRKIT RAVGRIKIGL QSKLFLGNLQ ASRDWGFAGD YVEAMWMMLQ QEKPDDYVVA TEESHTVEEF LEEAFGYVGL KWSDHVVIDK
301: RYFRPTEVDN LKGDSSKARK VLGWKPKVGF KQLVKMMVDE DVELAKREKV LVDAGYMDAQ QQP

Best Arabidopsis Sequence Match ( AT3G51160.1 )
(BLAST)

001: MASENNGSRS DSESITAPKA DSTVVEPRKI ALITGITGQD GSYLTEFLLG KGYEVHGLIR RSSNFNTQRI NHIYIDPHNV NKALMKLHYA DLTDASSLRR
101: WIDVIKPDEV YNLAAQSHVA VSFEIPDYTA DVVATGALRL LEAVRSHTID SGRTVKYYQA GSSEMFGSTP PPQSETTPFH PRSPYAASKC AAHWYTVNYR
201: EAYGLFACNG ILFNHESPRR GENFVTRKIT RALGRIKVGL QTKLFLGNLQ ASRDWGFAGD YVEAMWLMLQ QEKPDDYVVA TEEGHTVEEF LDVSFGYLGL
301: NWKDYVEIDQ RYFRPAEVDN LQGDASKAKE VLGWKPQVGF EKLVKMMVDE DLELAKREKV LVDAGYMDAK QQP

Arabidopsis Description

MUR1MUR_1 [Source:UniProtKB/TrEMBL;Acc:A0A178V6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.