Factsheet for Bra012067.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45223	Canola	cytosol	72.55	99.63
Bra031811.1-P	Field mustard	cytosol	90.76	94.08
AT5G66280.1	Thale cress	cytosol	89.13	90.86
Bra036833.1-P	Field mustard	cytosol	87.77	89.72
Bra038888.1-P	Field mustard	cytosol	87.77	89.72
Bra012865.1-P	Field mustard	cytosol	87.77	89.47
KRH28781	Soybean	cytosol, mitochondrion, nucleus	85.6	86.3
KRH76673	Soybean	cytosol, nucleus	85.05	85.75
PGSC0003DMT400036764	Potato	cytosol	83.7	84.85
Solyc03g118270.1.1	Tomato	cytosol	83.42	84.57
Solyc02g084210.1.1	Tomato	cytosol	82.07	83.66
PGSC0003DMT400009345	Potato	cytosol	81.79	83.61
GSMUA_Achr10P...	Banana	cytosol	64.4	83.16
VIT_04s0023g03170.t01	Wine grape	cytosol	83.42	82.31
TraesCS7A01G077700.1	Wheat	cytosol	60.87	79.72
HORVU1Hr1G083130.2	Barley	cytosol	46.2	77.27
GSMUA_Achr11P...	Banana	cytosol	11.41	75.0
EER89154	Sorghum	cytosol	76.09	74.87
TraesCS7A01G078000.2	Wheat	cytosol	75.54	74.73
Os06t0137700-01	Rice	cytosol	75.82	74.4
Zm00001d036091_P001	Maize	plasma membrane	75.82	74.01
Zm00001d045420_P001	Maize	cytosol	74.46	73.85
EER87803	Sorghum	cytosol	75.0	73.8
TraesCS7D01G073400.1	Wheat	cytosol	75.27	73.67
TraesCS4A01G376500.1	Wheat	cytosol	75.27	73.47
HORVU7Hr1G018000.2	Barley	cytosol	73.37	72.58
TraesCS7D01G073300.1	Wheat	cytosol	73.1	72.31
GSMUA_Achr2P02760_001	Banana	cytosol	41.3	70.37
EES03228	Sorghum	plastid	22.28	62.6
GSMUA_Achr2P02740_001	Banana	cytosol	41.3	61.29
HORVU6Hr1G020800.1	Barley	plastid	25.0	57.86
HORVU7Hr1G018100.2	Barley	cytosol	36.96	49.82
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.76	47.54
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	13.32	39.2

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra012067
EnsemblPlants:Bra012067.1	EnsemblPlants:Bra012067.1-P	InterPro:GDP_Man_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008446	GO:GO:0009987	GO:GO:0019673	UniProt:M4D6F8
HAMAP:MF_00955	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735
TIGRFAMs:TIGR01472	UniParc:UPI0002541845	:	:	:	:

Description

AT5G66280 (E=1e-193) GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase/ binding / catalytic/ coenzyme binding

Coordinates

chrA07:+:10214460..10215566

Molecular Weight (calculated)

41585.1 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.490

Length

368 amino acids

Sequence
(BLAST)

001: MASQDNVSRS EAPNASDSRI ALAKVALVTG ITGQDGSYLT EFLLQKGYEV HGLIRRSSNY NTQRINHIYV DPHNANKARM KLHYADLSDA SSLRRWLDVI
101: KPDEVYNLAA QSHVAVSFEI PDYTADVVAT GALRLLEAVR SHMADNGRNI KYYQAGSSEM FGSTPPPQSE TTPFHPRSPY AASKCAAHWY TVNYREAYGL
201: YACNGILFNH ESPRRGENFV TRKITRALGR IKVGLQTKLF LGNIQASRDW GFAGDYVEAM WLMLQQEKPD DYVVATEESH TVEQFLEVSF GYLGLSWKDH
301: VEIDKRYFRP TEVDNLKGDA SKAKEALKWK PKVGFEQLVK MMVDEDLEMA KREKVLVDAG YIDAQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.