Factsheet for GSMUA_Achr10P07810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	17.89	91.07
CDY45223	Canola	cytosol	78.6	83.58
CDY65887	Canola	cytosol	78.25	83.21
CDY55090	Canola	cytosol	78.95	83.03
GSMUA_Achr2P02760_001	Banana	cytosol	62.11	81.94
CDX81397	Canola	cytosol	22.81	73.86
GSMUA_Achr2P02740_001	Banana	cytosol	62.81	72.18
Bra031811.1-P	Field mustard	cytosol	82.81	66.48
PGSC0003DMT400036764	Potato	cytosol	84.56	66.39
Solyc03g118270.1.1	Tomato	cytosol	84.56	66.39
KRH76673	Soybean	cytosol, nucleus	84.56	66.03
CDX90659	Canola	cytosol	83.16	65.65
Bra012865.1-P	Field mustard	cytosol	83.16	65.65
Bra038888.1-P	Field mustard	cytosol	82.81	65.56
CDX73745	Canola	cytosol	82.81	65.56
CDY16314	Canola	cytosol	82.81	65.56
CDY33292	Canola	cytosol	82.81	65.56
KRH28781	Soybean	cytosol, mitochondrion, nucleus	83.86	65.48
CDY29005	Canola	cytosol	82.81	65.37
PGSC0003DMT400009345	Potato	cytosol	82.46	65.28
CDX77979	Canola	cytosol	82.46	65.28
Bra036833.1-P	Field mustard	cytosol	82.46	65.28
Solyc02g084210.1.1	Tomato	cytosol	82.46	65.1
AT5G66280.1	Thale cress	cytosol	82.46	65.1
VIT_04s0023g03170.t01	Wine grape	cytosol	84.91	64.88
Bra012067.1-P	Field mustard	cytosol	83.16	64.4
AT3G51160.1	Thale cress	cytosol	81.75	62.47
CDY30776	Canola	cytosol	54.04	52.38
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.11	51.64
HORVU7Hr1G018110.1	Barley	mitochondrion, plastid	1.05	2.4

Protein Annotations

KEGG:00051+4.2.1.47	KEGG:00520+4.2.1.47	MapMan:3.13.2.1.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:GDP_Man_deHydtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008446
GO:GO:0009987	GO:GO:0019673	EnsemblPlantsGene:GSMUA_Achr10G07810_001	EnsemblPlants:GSMUA_Achr10P07810_001	EnsemblPlants:GSMUA_Achr10T07810_001	UniProt:M0RGA7
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43715	SUPFAM:SSF51735	TIGRFAMs:TIGR01472
UniParc:UPI000294F882	:	:	:	:	:

Description

GDP-mannose 4,6 dehydratase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G07810_001]

Coordinates

chr10:+:17913550..17914617

Molecular Weight (calculated)

31971.9 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.335

Length

285 amino acids

Sequence
(BLAST)

001: MKLHYADLSD ASSLRRWVDA LLPDEVYNLA AQSHVAVSFE IPDYTADVVG TGALRLLEAV RCAPKPIRYY QAGSSEMFGS TPPPQSESSP FHPRSPYAAA
101: KVAAHWYTVN YREAYGLFAC NGILFNHESP RRGENFVTRK ITRALGRIRL GLQTKVYLGN LSAARDWGFA GDYVEAMWMM LQQDEPGDYV VATEESHTVE
201: EFLQAAFGHV GLDWKDHVVI DPKYFRPAEV DSLKGDSTKA RKALGWKPKV GFQDLVKMMV DHDLEIAKRE KVLVDAGYID AQQQP

Best Arabidopsis Sequence Match ( AT5G66280.1 )
(BLAST)

001: MASRSLNGDS DIVKPRKIAL VTGITGQDGS YLTEFLLEKG YEVHGLIRRS SNFNTQRLNH IYVDPHNVNK ALMKLHYGDL SDASSLRRWL DVIKPDEVYN
101: LAAQSHVAVS FEIPDYTADV VATGALRLLE AVRSHNIDNG RAIKYYQAGS SEMFGSTPPP QSETTPFHPR SPYAASKCAA HWYTVNYREA YGLYACNGIL
201: FNHESPRRGE NFVTRKITRA LGRIKVGLQT KLFLGNIQAS RDWGFAGDYV EAMWLMLQQE KPDDYVVATE ESHTVKEFLD VSFGYVGLNW KDHVEIDKRY
301: FRPTEVDNLK GDASKAKEML GWKPKVGFEK LVKMMVDEDL ELAKREKVLA DAGYMDAQQQ P

Arabidopsis Description

GMD1GMD1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7H7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.