CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87803
EER89154
EES01073
EES02247
EES03228
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	EES01073	AT2G42580.1	19000166
AT2G30520.1	EES02247	AT2G42580.1	19000166
AT2G30520.1	OQU78515	AT2G42580.1	19000166
AT2G30520.1	EER87803	AT5G66280.1	21798944
AT2G30520.1	EER89154	AT5G66280.1	21798944
AT2G30520.1	EES03228	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023314_P001	Maize	cytosol	71.85	80.41
OQU82741	Sorghum	plastid	59.24	70.27
TraesCS4A01G192900.1	Wheat	cytosol	54.48	69.22
TraesCS4D01G120400.1	Wheat	cytosol, plastid	55.04	68.83
TraesCS4B01G122300.1	Wheat	cytosol, plastid	54.76	68.48
Os12t0117400-01	Rice	plasma membrane	54.06	67.72
HORVU4Hr1G023260.3	Barley	cytosol, plastid	55.18	62.94
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	53.78	62.24
KRH30675	Soybean	cytosol	15.27	49.32
GSMUA_Achr11P...	Banana	cytosol, plastid	38.24	47.15
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	38.38	45.67
CDY10743	Canola	cytosol	35.57	43.72
CDY02075	Canola	cytosol	35.29	43.45
CDX84827	Canola	cytosol	34.17	43.19
Bra018309.1-P	Field mustard	cytosol, plastid	35.71	43.15
CDY23992	Canola	cytosol	34.03	43.01
PGSC0003DMT400031245	Potato	cytosol	34.31	42.53
Bra022805.1-P	Field mustard	cytosol	34.17	42.43
Solyc07g043130.2.1	Tomato	cytosol	34.17	42.36
AT2G30520.1	Thale cress	cytosol	35.01	42.16
VIT_06s0004g08230.t01	Wine grape	mitochondrion	33.75	42.13
KRG98106	Soybean	cytosol	33.75	42.06
KRH72843	Soybean	cytosol	33.89	41.72
KRH17211	Soybean	cytosol	33.75	41.62
KRH30676	Soybean	plastid	14.01	35.09
KXG39906	Sorghum	cytosol	27.31	31.71
OQU92601	Sorghum	plastid	26.89	29.05
OQU91026	Sorghum	cytosol, nucleus, plastid	22.41	26.76
EER93390	Sorghum	cytosol	25.21	26.63
EES16593	Sorghum	plastid	23.25	25.78
KXG25806	Sorghum	cytosol	23.39	25.54
EER91175	Sorghum	cytosol	22.55	25.52
EES05363	Sorghum	cytosol, nucleus, plastid	22.55	25.04
EES11510	Sorghum	cytosol	22.27	25.0
EES14497	Sorghum	cytosol	22.27	24.16
OQU93039	Sorghum	cytosol	20.59	24.14
EES10995	Sorghum	mitochondrion	21.99	24.01
EER98911	Sorghum	cytosol	20.45	23.59
EES03716	Sorghum	cytosol	21.43	23.5
OQU79444	Sorghum	cytosol	20.73	22.98
EER91236	Sorghum	cytosol	20.17	22.75
EER89339	Sorghum	cytosol	19.89	22.36
KXG35200	Sorghum	cytosol	17.79	21.97
EES07014	Sorghum	nucleus	22.55	20.83

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A1B6PAX7	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	InterPro:IPR000210	InterPro:IPR027356
EnsemblPlants:KXG22914	ProteinID:KXG22914	ProteinID:KXG22914.1	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	EnsemblPlantsGene:SORBI_3008G026800
SUPFAM:SSF54695	UniParc:UPI00081AB54C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:2428491..2430913

Molecular Weight (calculated)

74940.4 Da

IEP (calculated)

9.246

GRAVY (calculated)

-0.040

Length

714 amino acids

Sequence
(BLAST)

001: MPPLWYLLSF PDPAPPCTEA AAFAAAAVAS YSTTSSSSRV VSAAASTVTM DTIKQQCSKV SSSSSSSSLE MEIPADLIIR IGDSIFPLHK AVMVPKCSYI
101: RRAITALAAA ASSKAADDGD ATATVVELDL SALPGGADAF EKAARYCYGA NFEITPANAA ALRCAAAFLD MRHPSADLAR RVDEFLARSA LRTLPGAVAV
201: LRSCEAPDDD LLRAAADELG VARRAADAVA LAVCREALFP TTTTSGSSRL PGWWKVELAA LSPRSFARVV TALRCRRADP AVVAAAAGSY AELVLAEVLA
301: APRDCADQRA LLESVVDVLP SSADAPGIPA SFLCRLLHAA VATEASAKAC RDLELRVAAV LDQATAEDLL SVALDAAGER VRNTDTVRRV VTAFVERHAA
401: AAAAAPESER RRSRRASMSG TTAATELGAG TRPGALEKVA KMVDEVAAEI ATEEALPISK FVGVAGAVPK DARPSHDCLY RAVDIYLKTH PALDEIQREK
501: VCSVMDPLKL SYQARLHASQ NKRLPLQAVL SALYYDQLKL RSAADAATSM GDVVADTQTQ SSSAAGRARA QAMADAALAR ENEALRVELA RMRAYMSGTM
601: QHGKGRESST PASPSRTAKK ATFLGTELAR MRAYMSGMHH SKGSGATPPA SPSRTAAAKT KASLLGSVSR SLSRLNPFKG GWTTNHTGSI AAGGRPCKTM
701: HHVVTPKRRR SSIG

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.