Factsheet for GSMUA_Achr5P29690_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P02740_001
GSMUA_Achr2P02760_001
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT2G30520.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT2G30520.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT2G30520.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT2G30520.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT2G30520.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT2G30520.1	GSMUA_Achr10P...	AT5G66280.1	21798944
AT2G30520.1	GSMUA_Achr11P...	AT5G66280.1	21798944
AT2G30520.1	GSMUA_Achr11P...	AT5G66280.1	21798944
AT2G30520.1	GSMUA_Achr2P02740_001	AT5G66280.1	21798944
AT2G30520.1	GSMUA_Achr2P02760_001	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	76.83	79.62
KRH30675	Soybean	cytosol	23.67	64.25
VIT_06s0004g08230.t01	Wine grape	mitochondrion	56.5	59.27
PGSC0003DMT400031245	Potato	cytosol	54.17	56.42
Solyc07g043130.2.1	Tomato	cytosol	53.83	56.08
KRG98106	Soybean	cytosol	53.33	55.85
CDY10743	Canola	cytosol	52.83	54.56
KRH17211	Soybean	cytosol	52.5	54.4
KRH72843	Soybean	cytosol	52.5	54.31
CDY02075	Canola	cytosol	52.33	54.14
Bra018309.1-P	Field mustard	cytosol, plastid	53.17	53.98
CDY23992	Canola	cytosol	50.67	53.81
CDX84827	Canola	cytosol	50.5	53.63
Bra022805.1-P	Field mustard	cytosol	50.83	53.04
AT2G30520.1	Thale cress	cytosol	52.0	52.61
TraesCS4A01G192900.1	Wheat	cytosol	49.17	52.49
TraesCS4B01G122300.1	Wheat	cytosol, plastid	49.67	52.19
TraesCS4D01G120400.1	Wheat	cytosol, plastid	49.0	51.49
Os12t0117400-01	Rice	plasma membrane	48.83	51.4
Zm00001d005051_P001	Maize	cytosol	47.67	49.57
HORVU4Hr1G023260.3	Barley	cytosol, plastid	49.33	47.28
OQU82741	Sorghum	plastid	47.33	47.18
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	48.5	47.16
KRH30676	Soybean	plastid	21.83	45.96
Zm00001d023314_P001	Maize	cytosol	44.83	42.16
KXG22914	Sorghum	plastid	45.67	38.38
GSMUA_Achr6P27970_001	Banana	cytosol	32.33	37.52
GSMUA_Achr7P21950_001	Banana	plastid	34.67	36.94
GSMUA_Achr7P26300_001	Banana	cytosol	35.83	36.32
GSMUA_Achr4P01950_001	Banana	cytosol	22.5	33.09
GSMUA_Achr3P20380_001	Banana	cytosol	31.5	32.87
GSMUA_Achr8P30170_001	Banana	plastid	30.5	32.8
GSMUA_Achr8P04840_001	Banana	cytosol	31.33	31.97
GSMUA_Achr5P02440_001	Banana	cytosol	30.5	31.94
GSMUA_Achr1P11260_001	Banana	plastid	30.17	31.59
GSMUA_Achr6P30010_001	Banana	cytosol	28.83	31.57
GSMUA_Achr9P26110_001	Banana	cytosol	31.5	31.19
GSMUA_Achr9P26440_001	Banana	cytosol	30.0	30.93
GSMUA_Achr2P02890_001	Banana	cytosol	29.0	30.85
GSMUA_AchrUn_...	Banana	cytosol	21.83	30.82
GSMUA_Achr1P21440_001	Banana	cytosol	29.5	29.11
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	24.5	29.11
GSMUA_Achr4P31620_001	Banana	cytosol	28.83	28.98
GSMUA_Achr5P00550_001	Banana	cytosol	30.33	28.93
GSMUA_Achr4P10900_001	Banana	cytosol	26.83	28.9
GSMUA_Achr8P16390_001	Banana	cytosol	24.67	28.35
GSMUA_Achr5P01710_001	Banana	cytosol	27.17	28.06
GSMUA_Achr10P...	Banana	cytosol	25.0	27.12
GSMUA_Achr3P04740_001	Banana	cytosol	26.5	26.95
GSMUA_Achr10P...	Banana	cytosol	24.67	26.29
GSMUA_Achr10P...	Banana	cytosol	24.83	26.19
GSMUA_Achr7P26250_001	Banana	cytosol	27.0	25.96
GSMUA_Achr3P14590_001	Banana	cytosol	23.33	24.43
GSMUA_Achr3P12020_001	Banana	cytosol	22.17	24.36
GSMUA_Achr2P13430_001	Banana	cytosol	25.83	23.1
GSMUA_Achr3P25690_001	Banana	nucleus	28.0	14.07

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009638	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G29690_001	EnsemblPlants:GSMUA_Achr5P29690_001	EnsemblPlants:GSMUA_Achr5T29690_001
InterPro:IPR000210	InterPro:IPR027356	UniProt:M0T2U3	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000
PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI000296ABB7	SEG:seg	:	:

Description

Root phototropism protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29690_001]

Coordinates

chr5:-:29342571..29345493

Molecular Weight (calculated)

64194.9 Da

IEP (calculated)

6.910

GRAVY (calculated)

-0.081

Length

600 amino acids

Sequence
(BLAST)

001: MASSTPSSRL CAAMEKTSQW VLSQDIPSDI IVQVGDDTFR LHKFMLVANS GYIRRKVMES ERANLGCIDL SDVPGGAEVF EKAAKFCYGM NFEISVHNVT
101: ALRCAAEYLQ MTEDYSRGNL AERAEEFINQ AAVKTLPGAV ALLRSCEGSL LPMAEEVRIV QRSVDAISLK YISERSKPTN PTTLYELVGA FNEANIPTRS
201: PPDWWAGELA ALAPASLQKI LSAMKSRGVA PKSLAAAVVV YAEKSLAELL PLSSGAPASN HSGDARIRQC GLLESLVHVL PPHPDAPLPV GFICCLLRAA
301: LFVEASAACR QELEQRASAS LEQATVADLL TVSLDYSGER IVDLDSARRI VASFAEREAG GGGGALYGGG GGVACCSAAV QKVARTVDGF VGEIATDEEL
401: SVSKFAGIAG ALPKSARRFD DDLYRAVDIY LKAHPGLAEI EREKVCSVMD PLKLSYEARL HASQNKRLPL QIVLHALYYD QLKLRSGIDG EAAAGALGVT
501: LGRDEGLKAD VSLIRENETL RSELAKMKMY VSELQRGGGG GGGEGSGVKI GSKKTSFFSS VSRTLGKLNP FKQGSKDTSN IDDGVGVDVT KPRRRRFSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.