Factsheet for GSMUA_Achr1P21440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr5P21060_001
GSMUA_Achr7P11570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	GSMUA_Achr10P...	AT2G02950.1	16777956
AT5G64330.1	GSMUA_Achr7P11570_001	AT2G02950.1	16777956
AT5G64330.1	GSMUA_Achr11P...	AT4G25160.1	16777956
AT5G64330.1	GSMUA_Achr5P21060_001	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20380_001	Banana	cytosol	52.63	55.65
KRH23618	Soybean	cytosol	41.78	50.2
PGSC0003DMT400083737	Potato	cytosol	53.29	49.17
VIT_03s0038g00270.t01	Wine grape	cytosol	54.28	48.96
Solyc01g105680.2.1	Tomato	nucleus	53.29	48.43
KRH42114	Soybean	cytosol	53.12	48.07
PGSC0003DMT400006173	Potato	cytosol	52.96	47.63
Solyc10g047530.1.1	Tomato	cytosol	52.63	47.48
KRH10586	Soybean	cytosol	52.47	47.47
KRH21782	Soybean	cytosol	52.14	46.82
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	54.28	44.18
Bra024285.1-P	Field mustard	cytosol	51.48	43.17
CDX84515	Canola	cytosol	51.32	42.98
CDY18715	Canola	cytosol	50.82	42.68
AT5G64330.1	Thale cress	cytosol	51.81	42.23
Bra037773.1-P	Field mustard	cytosol	50.82	41.93
CDX81221	Canola	cytosol	50.33	41.92
GSMUA_Achr6P30010_001	Banana	cytosol	32.89	36.5
GSMUA_Achr5P02440_001	Banana	cytosol	34.05	36.13
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	29.28	35.25
GSMUA_AchrUn_...	Banana	cytosol	24.51	35.06
GSMUA_Achr5P00550_001	Banana	cytosol	36.02	34.82
GSMUA_Achr9P26110_001	Banana	cytosol	34.05	34.16
GSMUA_Achr5P01710_001	Banana	cytosol	32.57	34.08
GSMUA_Achr4P01950_001	Banana	cytosol	22.86	34.07
GSMUA_Achr2P02890_001	Banana	cytosol	31.41	33.87
GSMUA_Achr6P27970_001	Banana	cytosol	28.45	33.46
GSMUA_Achr4P31620_001	Banana	cytosol	32.4	33.0
GSMUA_Achr10P...	Banana	cytosol	29.44	32.37
GSMUA_Achr4P10900_001	Banana	cytosol	29.61	32.32
GSMUA_Achr8P16390_001	Banana	cytosol	26.81	31.23
GSMUA_Achr9P26440_001	Banana	cytosol	29.61	30.93
GSMUA_Achr10P...	Banana	cytosol	28.62	30.91
GSMUA_Achr7P21950_001	Banana	plastid	28.45	30.73
GSMUA_Achr8P04840_001	Banana	cytosol	29.44	30.44
GSMUA_Achr10P...	Banana	cytosol	28.29	30.23
GSMUA_Achr7P26250_001	Banana	cytosol	30.76	29.97
GSMUA_Achr3P04740_001	Banana	cytosol	28.78	29.66
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	29.11	29.5
GSMUA_Achr3P12020_001	Banana	cytosol	26.48	29.49
GSMUA_Achr8P30170_001	Banana	plastid	26.97	29.39
GSMUA_Achr7P26300_001	Banana	cytosol	28.45	29.22
GSMUA_Achr3P14590_001	Banana	cytosol	27.14	28.8
GSMUA_Achr11P...	Banana	cytosol, plastid	27.14	28.5
GSMUA_Achr1P11260_001	Banana	plastid	26.81	28.45
GSMUA_Achr2P13430_001	Banana	cytosol	29.28	26.53
GSMUA_Achr3P25690_001	Banana	nucleus	27.14	13.82

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G21440_001	EnsemblPlants:GSMUA_Achr1P21440_001	EnsemblPlants:GSMUA_Achr1T21440_001	InterPro:IPR000210	InterPro:IPR027356
UniProt:M0S1V2	InterPro:NPH3-like	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI000295D4A1	SEG:seg

Description

Putative Coleoptile phototropism protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21440_001]

Coordinates

chr1:-:16127586..16129636

Molecular Weight (calculated)

67807.9 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.286

Length

608 amino acids

Sequence
(BLAST)

001: MWDPKVESCS EDRASYEESF DRDEVDDLKM DGFFLIDNSW YVTDDNPSDL LIRVGGTNFH LHQNPMVSRC GTVKGIIEDS SGGSELRVIE LDDIPGGPDA
101: FMLAAKFCYG FAIDLTPSNI AGLRCASEYL DMTEDLQEGN LAVKTEAFLS YVVFSSWKNA VAVLKSCESL SPWAENLQIV RRCSESIAWK ACARPKEMKR
201: SSSTWSSSSE ERSPRSDLLQ APTHWWFEDV STLRDDHFAK VVTAMELKGM RSDLIGAAIM NYASTCLPDL CKRAAINADG NPNAQSRDRR LIVESLVAMI
301: PATKNCVPCT FLLQLLRTAK TLQVEPAAIV ELEKRVGMQL EQANLPDLLL PSDRESEALY DIDLMQRLVE HFVDQERTEM SASEKHGYGV CSGPIRTSSK
401: AKVAELLDGY LAEVSTDRNL PLAKFKVLAR ALPESARTCD DDLYRAVDSY LKVHPALAAH ERMRLCQVMD CRKLSVDACA HAVKNERLPI RFAIQLLFSK
501: QVTMTDSIAG SWIEGAHSMI PTKQRLLLQR DPRTQCSQEG SVAAAEVNKL SFELENMKAK HSELRRDMDG LHRALEEMSS SSSKPTTHSS VWARVGRKLG
601: IRVGLSSM

Best Arabidopsis Sequence Match ( AT5G10250.2 )
(BLAST)

001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVSSP EVYTIYNVDV VHRIFEFFLM HEQQQVLGKP
401: SISKLLDNYL AEIAKDPYLP ITKFQVLAEM LPENAWKCHD GLYRAIDMFL KTHPSLSDHD RRRLCKTMNC EKLSLDACLH AAQNDRLPLR TIVQINTQVL
501: FSEQVKMRMM MQDKLPEKEE ENSGGREDKR MSRDNEIIKT LKEELENVKK KMSELQSDYN ELQQEYERLS SKQKSSHNWG LRWQKVKKSF QTKREDEETR
601: ERTRRRSSTG QRTSFRRRMS MS

Arabidopsis Description

DOT3Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G10250]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.