Factsheet for Solyc10g047530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g093450.2.1
Solyc05g051610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	Solyc03g093450.2.1	AT4G25160.1	16777956
AT5G64330.1	Solyc05g051610.1.1	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006173	Potato	cytosol	97.77	97.49
Solyc01g105680.2.1	Tomato	nucleus	85.76	86.4
VIT_03s0038g00270.t01	Wine grape	cytosol	83.98	83.98
KRH42114	Soybean	cytosol	80.27	80.51
KRH23618	Soybean	cytosol	59.64	79.45
KRH10586	Soybean	cytosol	79.08	79.32
GSMUA_Achr3P20380_001	Banana	cytosol	67.21	78.78
KRH21782	Soybean	cytosol	78.93	78.58
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	81.01	73.09
CDX84515	Canola	cytosol	77.6	72.04
Bra024285.1-P	Field mustard	cytosol	77.45	72.0
AT5G64330.1	Thale cress	cytosol	78.49	70.91
CDX81221	Canola	cytosol	75.67	69.86
CDY18715	Canola	cytosol	74.93	69.75
Bra037773.1-P	Field mustard	cytosol	75.22	68.79
HORVU6Hr1G015480.1	Barley	cytosol	67.8	62.52
TraesCSU01G114000.1	Wheat	cytosol	67.95	62.23
TraesCS6B01G117400.1	Wheat	cytosol	68.1	62.2
TraesCS6A01G085100.1	Wheat	cytosol	67.36	62.11
Zm00001d016898_P001	Maize	cytosol	67.51	60.75
EES07014	Sorghum	nucleus	68.25	59.51
Os02t0568200-00	Rice	cytosol	66.32	58.66
Zm00001d004440_P001	Maize	cytosol	50.89	53.76
GSMUA_Achr1P21440_001	Banana	cytosol	47.48	52.63
KXG25806	Sorghum	cytosol	48.52	50.0
Solyc05g051580.2.1	Tomato	cytosol	41.39	44.71
Solyc02g021640.2.1	Tomato	nucleus	37.39	40.06
Solyc02g092480.2.1	Tomato	cytosol	36.35	39.01
Solyc09g007820.1.1	Tomato	cytosol	34.27	38.69
Solyc05g013570.2.1	Tomato	nucleus	34.42	38.03
Solyc02g092560.2.1	Tomato	cytosol, nucleus	33.53	37.92
Solyc03g044090.2.1	Tomato	cytosol	35.01	37.46
Solyc01g107180.2.1	Tomato	cytosol	33.83	36.42
Solyc09g061250.2.1	Tomato	cytosol	32.64	36.24
Solyc10g049660.1.1	Tomato	cytosol	32.79	36.17
Solyc01g098820.2.1	Tomato	cytosol, extracellular	29.67	36.1
Solyc09g048980.2.1	Tomato	cytosol	28.19	35.98
Solyc02g090070.2.1	Tomato	nucleus	34.42	35.64
Solyc08g006870.2.1	Tomato	cytosol	32.34	35.45
Solyc11g066730.1.1	Tomato	cytosol	32.34	34.55
Solyc07g043130.2.1	Tomato	cytosol	28.34	33.16
Solyc02g064720.2.1	Tomato	cytosol	29.53	32.89
Solyc09g074630.2.1	Tomato	cytosol	24.48	32.29

Protein Annotations

MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356	UniProt:K4D015	InterPro:NPH3-like	InterPro:NPH3_dom
PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6	InterPro:SKP1/BTB/POZ_sf
SUPFAM:SSF54695	EnsemblPlantsGene:Solyc10g047530.1	EnsemblPlants:Solyc10g047530.1.1	UniParc:UPI0002769D64	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:41046643..41048951

Molecular Weight (calculated)

76100.7 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.438

Length

674 amino acids

Sequence
(BLAST)

001: MWESESESVS GRDYGNGVLN NTKHGVKTDG FEQKGQSWYV ATDIPSDLLV QIGDVSFHLH KYPLLSRSGK MNRIIYETRD EELSRIALND LPGGWEAFEL
101: AAKFCYGIAV DLTATNISGL RCAAEYLEMT EDLEEGNLIF KTEAFLSYVV LSSWRDSILV LKSCERLSPW AENLQIVRRC SESIAWKACA NPKGIKWQYT
201: GRLPTSVSSP KWNEMKDSSP SRNQQLVPPD WWFEDVSILR IDHFVRVITA IKVKGMRHEL IGAVLMHYAT KWIPGLIKEG SGSLDDCSNS STSNGSSSSS
301: WKGGLHMIVS GSREEVPTIQ AKDQRMIIES LISIIPQQKD SVSCSFLLRL LRMANLLKVA PALVTELEKR VGMQFEQATL ADLLIPSYNK SETLYDVDLV
401: QRLLEHFLVQ EQTESSSPSR SSFSDKHMHD ANQRGANLNA KMRVAKLVDS YLTEVSRDRN LSLTKFQVLA EALPESARTC DDGLYRAIDS YLKAHPTLSE
501: HERKRLCRVM DCQKLSIDAC MHAAQNERLP LRVVVQVLFS EQVKISNAIS SSSLKDAGES HYQPLVSNRK TLLEATPQSF QEGWTTAKKD INTLKFELDT
601: VKAKYVQLQN DMENLQKQFD KITKPKQGSG WTAGWKKLSK LTKMTHLESQ ENSPHAPNAE PTRKTPRRWR NSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.