Factsheet for Os02t0568200-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0140800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	Os06t0140800-01	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G015480.1	Barley	cytosol	77.95	81.26
TraesCSU01G114000.1	Wheat	cytosol	77.95	80.71
Zm00001d016898_P001	Maize	cytosol	79.27	80.64
TraesCS6A01G085100.1	Wheat	cytosol	77.03	80.3
TraesCS6B01G117400.1	Wheat	cytosol	77.43	79.95
EES07014	Sorghum	nucleus	79.53	78.4
GSMUA_Achr3P20380_001	Banana	cytosol	56.04	74.26
VIT_03s0038g00270.t01	Wine grape	cytosol	61.55	69.58
KRH42114	Soybean	cytosol	60.1	68.15
KRH23618	Soybean	cytosol	44.88	67.59
KRH10586	Soybean	cytosol	59.58	67.56
KRH21782	Soybean	cytosol	59.58	67.06
PGSC0003DMT400006173	Potato	cytosol	59.06	66.57
Solyc10g047530.1.1	Tomato	cytosol	58.66	66.32
PGSC0003DMT400083737	Potato	cytosol	57.35	66.31
Solyc01g105680.2.1	Tomato	nucleus	57.87	65.92
CDX84515	Canola	cytosol	60.37	63.36
Bra024285.1-P	Field mustard	cytosol	60.24	63.31
CDY18715	Canola	cytosol	59.19	62.29
CDX81221	Canola	cytosol	59.58	62.19
AT5G64330.1	Thale cress	cytosol	60.5	61.8
Bra037773.1-P	Field mustard	cytosol	59.45	61.47
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	60.1	61.31
Os08t0130600-01	Rice	plasma membrane	31.23	37.13
Os12t0613250-00	Rice	plasma membrane	31.5	36.92
Os03t0205700-01	Rice	cytosol	28.48	35.87
Os04t0636500-01	Rice	plasma membrane	30.18	35.71
Os03t0609800-02	Rice	cytosol	29.66	35.65
Os12t0583500-01	Rice	cytosol, plasma membrane	29.27	34.95
Os09t0420900-01	Rice	cytosol	28.08	34.63
Os03t0206700-00	Rice	plasma membrane	27.82	33.87
Os01t0780600-01	Rice	plasma membrane	29.27	33.84
Os06t0184500-00	Rice	cytosol	27.95	33.07
Os11t0118500-00	Rice	plastid	27.17	32.19
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	27.69	32.16
Os12t0117600-01	Rice	plastid	27.43	32.1
Os09t0266600-01	Rice	cytosol	17.32	31.73
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	25.98	31.58
Os03t0347700-01	Rice	mitochondrion, plastid	27.56	31.3
Os03t0767600-01	Rice	cytosol	26.51	29.58
Os12t0117400-01	Rice	plasma membrane	22.05	29.47
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	21.78	26.9
Os02t0594700-01	Rice	cytosol, mitochondrion	5.91	23.68
Os12t0613300-02	Rice	nucleus	0.26	0.67

Protein Annotations

MapMan:19.2.2.8.2.2.1	EntrezGene:4329720	EMBL:AB186127	ProteinID:BAD17765.1	ProteinID:BAD17773.1	ProteinID:BAF09095.1
ProteinID:BAS79325.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638
GO:GO:0009987	GO:GO:0016020	GO:GO:0016567	GO:GO:0019538	InterPro:IPR027356	InterPro:NPH3-like
InterPro:NPH3_dom	EnsemblPlantsGene:Os02g0568200	EnsemblPlants:Os02t0568200-00	PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF6	UniProt:Q5KS50	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI00004A2F28	RefSeq:XP_015624758.1
SEG:seg	:	:	:	:	:

Description

COLEOPTILE PHOTOTROPISM 1NPH3 domain containing protein. (Os02t0568200-00)

Coordinates

chr2:-:21608165..21613272

Molecular Weight (calculated)

80608.6 Da

IEP (calculated)

7.733

GRAVY (calculated)

-0.231

Length

762 amino acids

Sequence
(BLAST)

001: MWESESESHG GERGLVPVGG GGGSGRHEAA LKNDGFVRRD RSWYVNSDIP SDLLVKVGDV NFYLHKYPMI SRSGRMSRAV YESSAADEAE ADAAAAVAVV
101: EMGDLPGGAG SFELAARFSY GMAVDLTAAN ISGLRCAAEY LEMTEEMEEG NLIFKTEAFL SYVVLSSWRD SIAVLKSCEA LSPWAENLQI VRRCSESIAW
201: KACANPRGVR WAYTGAGAGS GGARGGPAAI RGGGGSGGTA SPRWNVGGGG GGESKESSPS RQAVPPADWW FEDVSVLRID HFVRVVTAIK VKGMRFDLIG
301: AAITHYASKW LPGLTKDAPL GATHDEPWAQ ASAAGVGGGG LHMMIISGAG GGKDDVLAAC SAPSREQRMV VESIISITPP QRDSVSCGFL LRLLRLAIML
401: RAAPALVTEL EKRVGMQLEQ AALADLLIPS YGGRAADTAY DVDLVQRLVE HFLVQEQTEM AVASSPGRGD PPPPPQPEYY SGRMPPSSAA AASASASTGG
501: LNAKARVARL LDSYLSEVSR DRNLSLTKFQ VLAESLPESA RACDDGLYRA VDSYLKAHPT LTEHERKRLC RVMDCQKLSF DACMHAAQNE RLPLRVVVQV
601: LFTEQVKISN ALASSSAALR SSSSAPGADA APAMPTTRRQ LLDGTPQSFQ EGWAAAKKDI NTLKFELESM KAKYLELQHE MDALQKQVDG RGGGAPSPAA
701: AKIGKQQQQG TSASAWSSGW KKLGRLAKMS GADAAAGGGV APPGGGEAAA RKGPRRWRNS IS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.