Factsheet for Solyc01g105680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g093450.2.1
Solyc05g051610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	Solyc03g093450.2.1	AT4G25160.1	16777956
AT5G64330.1	Solyc05g051610.1.1	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083737	Potato	cytosol	96.56	98.03
Solyc10g047530.1.1	Tomato	cytosol	86.4	85.76
VIT_03s0038g00270.t01	Wine grape	cytosol	83.86	83.23
KRH42114	Soybean	cytosol	79.97	79.61
KRH23618	Soybean	cytosol	58.0	76.68
KRH10586	Soybean	cytosol	76.83	76.49
GSMUA_Achr3P20380_001	Banana	cytosol	65.47	76.17
KRH21782	Soybean	cytosol	76.68	75.78
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	80.57	72.16
CDX84515	Canola	cytosol	77.73	71.63
Bra024285.1-P	Field mustard	cytosol	77.58	71.59
AT5G64330.1	Thale cress	cytosol	77.73	69.71
CDY18715	Canola	cytosol	74.89	69.2
CDX81221	Canola	cytosol	75.34	69.04
Bra037773.1-P	Field mustard	cytosol	74.89	67.98
HORVU6Hr1G015480.1	Barley	cytosol	66.07	60.47
TraesCS6A01G085100.1	Wheat	cytosol	65.77	60.19
TraesCS6B01G117400.1	Wheat	cytosol	66.37	60.16
TraesCSU01G114000.1	Wheat	cytosol	66.07	60.05
Zm00001d016898_P001	Maize	cytosol	67.12	59.95
Os02t0568200-00	Rice	cytosol	65.92	57.87
EES07014	Sorghum	nucleus	66.67	57.7
GSMUA_Achr1P21440_001	Banana	cytosol	48.43	53.29
Zm00001d004440_P001	Maize	cytosol	49.78	52.19
KXG25806	Sorghum	cytosol	47.98	49.08
Solyc05g051580.2.1	Tomato	cytosol	42.6	45.67
Solyc02g021640.2.1	Tomato	nucleus	37.07	39.43
Solyc09g007820.1.1	Tomato	cytosol	33.78	37.86
Solyc02g092480.2.1	Tomato	cytosol	35.28	37.58
Solyc02g092560.2.1	Tomato	cytosol, nucleus	33.18	37.25
Solyc05g013570.2.1	Tomato	nucleus	33.78	37.05
Solyc03g044090.2.1	Tomato	cytosol	34.83	36.98
Solyc01g107180.2.1	Tomato	cytosol	33.78	36.1
Solyc10g049660.1.1	Tomato	cytosol	32.59	35.68
Solyc09g048980.2.1	Tomato	cytosol	27.95	35.42
Solyc01g098820.2.1	Tomato	cytosol, extracellular	29.3	35.38
Solyc02g090070.2.1	Tomato	nucleus	34.23	35.18
Solyc09g061250.2.1	Tomato	cytosol	31.69	34.93
Solyc08g006870.2.1	Tomato	cytosol	31.69	34.47
Solyc11g066730.1.1	Tomato	cytosol	32.29	34.23
Solyc02g064720.2.1	Tomato	cytosol	29.75	32.89
Solyc07g043130.2.1	Tomato	cytosol	28.25	32.81
Solyc09g074630.2.1	Tomato	cytosol	24.51	32.09

Protein Annotations

MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	InterPro:IPR000210	InterPro:IPR027356	UniProt:K4B2D8	InterPro:NPH3-like	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc01g105680.2	EnsemblPlants:Solyc01g105680.2.1	UniParc:UPI000276914C	SEG:seg

Description

No Description!

Coordinates

chr1:+:93766640..93769685

Molecular Weight (calculated)

75563.1 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.422

Length

669 amino acids

Sequence
(BLAST)

001: MWESENESVG GRDYGNGVHS TSKNGVKTDS FEQKGQSWYV ATDIPSDLLV QIEDVTFHLH KYPLLSRSGK MNRIIYESRD AELNKISLNE LPGGPEAFEL
101: AAKFCYGIAI DLSATNISGL RCAAEYLEMT EDLEEGNLIF KTEAFLSYVV LSSWRDSILV LKSCEKLSPW AENLQIVRRC SESIAWKACA NPKGIKWQYT
201: GKPASVSSPS WNQMKDSSPS RNHQVPPDWW FEDVTILRID HFVRVITAIK VKGMRHELIG ASIMQYATKW LPGLIKEGSG LAEDGCNSSN SNGSSSWRGG
301: LHMIIAGSGE EIPTVQAKDQ RMIVESLISI LPQQKDSVSC SFLLRLLRMA NMLKVAPALI TELEKRVGMQ FEQATLADLL IPSYHKSETM YDIDLVQRLL
401: EHFIIQEQTE SSSPSRYPFH DKHMQDGSQR GTNLNAKMRV ARLVDSYLTE VSRDRNLSLT KFQVLAEALP DSARTCDDGL YRAIDSYLKA HPTLSEHERK
501: RLCRVMDCQK LSVDACMHAA QNERLPLRVV VQVLFSEQVK ISNAIANISL KDEGETHYQP LVSHHKSLLE ATPQSFQEGW TAAKKDINTL KFELETVKTK
601: YVELQNDMVD LQRQFDKIAK PKQASAWTAG WKKLSKLTKT TNVETHDISS QIPNAEQTTK PRRWRNSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.