Factsheet for Solyc02g092560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00380.t01	Wine grape	cytosol	77.01	72.17
CDY68489	Canola	cytosol, plastid	53.69	71.27
KRH77099	Soybean	cytosol	73.15	70.55
KRH28386	Soybean	cytosol	73.32	69.37
KRH58066	Soybean	cytosol	68.12	68.81
KRH04469	Soybean	cytosol	66.61	68.1
CDY12841	Canola	cytosol	68.29	67.5
Bra012158.1-P	Field mustard	cytosol	67.95	67.39
AT5G67385.1	Thale cress	cytosol	68.29	67.38
Solyc02g064720.2.1	Tomato	cytosol	68.12	67.11
CDY57436	Canola	cytosol	67.79	67.0
CDY37857	Canola	cytosol	67.11	66.67
GSMUA_Achr7P26300_001	Banana	cytosol	64.09	64.53
Bra031830.1-P	Field mustard	cytosol	57.55	62.14
CDY30615	Canola	cytosol	50.84	60.72
CDY57361	Canola	cytosol	50.34	60.12
AT3G49970.2	Thale cress	extracellular	51.34	59.42
TraesCS4B01G255500.1	Wheat	cytosol	58.72	57.85
TraesCS4D01G255500.1	Wheat	cytosol	59.23	57.68
TraesCS4A01G049300.1	Wheat	cytosol	58.72	57.57
HORVU4Hr1G069480.3	Barley	cytosol	58.22	56.61
Zm00001d028056_P001	Maize	cytosol	55.87	55.78
Bra036043.1-P	Field mustard	cytosol	50.84	55.29
Os03t0206700-00	Rice	plasma membrane	58.05	55.27
KXG39906	Sorghum	cytosol	56.71	54.96
Solyc09g048980.2.1	Tomato	cytosol	38.42	43.37
Solyc09g061250.2.1	Tomato	cytosol	43.29	42.5
Solyc07g043130.2.1	Tomato	cytosol	40.44	41.84
Solyc09g074630.2.1	Tomato	cytosol	32.55	37.96
Solyc09g007820.1.1	Tomato	cytosol	34.06	34.0
Solyc10g047530.1.1	Tomato	cytosol	37.92	33.53
Solyc02g021640.2.1	Tomato	nucleus	35.07	33.23
Solyc01g105680.2.1	Tomato	nucleus	37.25	33.18
Solyc02g090070.2.1	Tomato	nucleus	36.24	33.18
Solyc01g107180.2.1	Tomato	cytosol	32.38	30.83
Solyc05g013570.2.1	Tomato	nucleus	31.54	30.82
Solyc11g066730.1.1	Tomato	cytosol	32.38	30.59
Solyc08g006870.2.1	Tomato	cytosol	31.38	30.41
Solyc10g049660.1.1	Tomato	cytosol	30.7	29.95
Solyc05g051580.2.1	Tomato	cytosol	31.21	29.81
Solyc03g044090.2.1	Tomato	cytosol	31.04	29.37
Solyc02g092480.2.1	Tomato	cytosol	30.87	29.3
Solyc01g098820.2.1	Tomato	cytosol, extracellular	25.5	27.44

Protein Annotations

EnsemblPlants:Solyc02g092560.2.1	EnsemblPlantsGene:Solyc02g092560.2	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil
PANTHER:PTHR32370	PANTHER:PTHR32370:SF14	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002768122	UniProt:K4BD52	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:-:53612631..53616217

Molecular Weight (calculated)

66667.2 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.244

Length

596 amino acids

Sequence
(BLAST)

001: MTTKKDELLF SAMKRTSDWI FSQEIPSDVT VNAGGTSFTL HKFPLVSKSG YIRKLISESN EADVSTIDIP DIPGGGEAFE LAAKFCYGIN FEISTENIAL
101: LRCVAEYLEM TEDYAVANLV ERTEAYFNEV AITSLAGAVT ILRSSENLLP IAEKVKLVSR CIDTIAYTAC KDNQFSTSGR AEAGINGSTF SNPKPIVDWW
201: SEDITVLRID FFQRVLIAMM ARGFKRYALG PILMLYAQKS LRGLEIFGKG RKKIEPKQEH EKRVVLETIV SLLPKEKNAL SVSFLSMLLR AAIYLETTIA
301: CRLDLEKRMA LQLGQAVLDD LLIPSSSFTG DTLYDVETVQ RIMMNFLDNE EGNRLGDEEY HVSPSLSDME RVGKLMENYL AEIASDRNLS VTNFINLAEV
401: IPEQARITED GMYRAIDIYL KAHPALSDIE RKKVCGIMDC QKLSREACAH AAQNDRLPVQ TVVQVLYYEQ QRLHNGSQLV ATEPPALVSS KRDDQFSTNP
501: VSDEVSSLKR ENQELKFELL KMKTRLIEIE KPKSNTSASS SPLVITQPSA GKPPLPRKSN FMSSVSKKLG RFIRADGLTH GKARNKPSKD RRHSIS

Best Arabidopsis Sequence Match ( AT5G67385.1 )
(BLAST)

001: MSAKKKDLLS SAMKRTSEWI SSQEVSSDVT VHVGEASFSL HKFPLMSKCG FIKKLVSESS KDSDSTVIKI PDIPGGSEAF ELAAKFCYGI NFDMSTENIA
101: MLRCAAEYLE MTEEHSVENL VVRAEAYLNE VALKSLSSSI TVLHKSEKLL PIAERVKLVS RCIDAIAYMT CQESHFCSPS SSNSGNNEVV VQQQSKQPVV
201: DWWAEDLTVL RIDSFQRVLI AMMARGFKQY GLGPVLMLYA QKSLRGLEIF GKGMKKIEPK QEHEKRVILE TIVSLLPREK NAMSVSFLSM LLRAAIFLET
301: TVACRLDLEN RMGLQLGQAV LDDLLIPSYS FTGDHSMFDT DTVQRILMNY LEFEVEGVRL SNNGVDLAGD MERVGKLLEN YMAEIASDRN VSLQKFIGLA
401: ELIPEQSRVT EDGMYRAVDI YLKAHPNMSD VERKKVCSLM DCQKLSREAC AHAAQNDRLP VQTIVQVLYY EQQRLRGEVT NDSDSPAPPP PQPAAVLPPK
501: LSSYTDELSK LKRENQDLKL ELLKMKMKLK EFEKESEKKT SSSTISTNPS SPISTASTGK PPLPRKSFIN SVSKKLGKLN PFSITPYNGR GRTKPPKDRR
601: HSIS

Arabidopsis Description

SR1IP1BTB/POZ domain-containing protein At5g67385 [Source:UniProtKB/Swiss-Prot;Acc:Q66GP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.