Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g052050.1.1 | |
| Solyc07g052190.1.1 | |
| Solyc09g065280.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66560.1 | Solyc07g052050.1.1 | AT1G03140.1 | 21798944 |
| AT5G66560.1 | Solyc07g052190.1.1 | AT1G03140.1 | 21798944 |
| AT5G66560.1 | Solyc09g065280.2.1 | AT1G03140.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026008 | Potato | cytosol | 95.85 | 94.69 |
| VIT_00s0207g00230.t01 | Wine grape | cytosol | 70.97 | 72.76 |
| KRH08351 | Soybean | cytosol | 65.28 | 65.59 |
| CDY45241 | Canola | cytosol | 59.45 | 64.72 |
| KRH28552 | Soybean | cytosol | 58.83 | 64.7 |
| CDY30765 | Canola | cytosol | 62.06 | 63.72 |
| KRH69999 | Soybean | endoplasmic reticulum | 65.28 | 62.5 |
| AT5G66560.1 | Thale cress | cytosol | 63.13 | 61.53 |
| Bra012082.1-P | Field mustard | cytosol | 62.67 | 60.99 |
| KRH76914 | Soybean | cytosol | 46.54 | 59.41 |
| AT3G50840.1 | Thale cress | cytosol | 51.46 | 58.88 |
| GSMUA_Achr9P26440_001 | Banana | cytosol | 52.38 | 58.59 |
| CDX77951 | Canola | cytosol | 49.16 | 58.39 |
| GSMUA_Achr8P04840_001 | Banana | cytosol | 52.07 | 57.65 |
| CDX73781 | Canola | cytosol | 48.08 | 57.43 |
| Bra036858.1-P | Field mustard | cytosol | 49.92 | 56.62 |
| OQU91026 | Sorghum | cytosol, nucleus, plastid | 47.93 | 52.17 |
| HORVU5Hr1G093880.1 | Barley | cytosol | 32.72 | 51.2 |
| EER93390 | Sorghum | cytosol | 52.69 | 50.74 |
| Zm00001d033941_P001 | Maize | mitochondrion, plastid | 49.16 | 50.71 |
| Os03t0767600-01 | Rice | cytosol | 52.53 | 50.07 |
| TraesCS5D01G389200.2 | Wheat | cytosol, plastid | 49.31 | 49.61 |
| Os03t0738900-00 | Rice | nucleus, plasma membrane, plastid | 49.92 | 49.54 |
| TraesCS5B01G408200.1 | Wheat | cytosol | 51.0 | 49.26 |
| TraesCS5D01G413400.1 | Wheat | cytosol | 50.84 | 49.18 |
| TraesCS5A01G379300.1 | Wheat | cytosol, plastid | 49.16 | 49.16 |
| TraesCS5A01G403400.1 | Wheat | cytosol | 50.69 | 48.82 |
| TraesCS5B01G383100.1 | Wheat | plastid | 48.69 | 48.47 |
| HORVU5Hr1G093850.15 | Barley | mitochondrion | 48.54 | 48.17 |
| HORVU5Hr1G098170.1 | Barley | cytosol, mitochondrion | 50.54 | 48.03 |
| Solyc02g021640.2.1 | Tomato | nucleus | 46.39 | 48.01 |
| Zm00001d013182_P003 | Maize | cytosol, mitochondrion | 51.77 | 47.94 |
| TraesCS1B01G298700.1 | Wheat | cytosol, plastid | 30.41 | 47.83 |
| TraesCS2D01G507400.1 | Wheat | nucleus | 39.94 | 47.27 |
| Solyc09g007820.1.1 | Tomato | cytosol | 39.02 | 42.55 |
| Solyc11g066730.1.1 | Tomato | cytosol | 37.17 | 38.35 |
| Solyc09g048980.2.1 | Tomato | cytosol | 30.57 | 37.69 |
| Solyc09g061250.2.1 | Tomato | cytosol | 33.79 | 36.24 |
| Solyc02g092560.2.1 | Tomato | cytosol, nucleus | 33.18 | 36.24 |
| Solyc07g043130.2.1 | Tomato | cytosol | 31.8 | 35.94 |
| Solyc10g047530.1.1 | Tomato | cytosol | 35.64 | 34.42 |
| Solyc01g105680.2.1 | Tomato | nucleus | 35.18 | 34.23 |
| Solyc01g107180.2.1 | Tomato | cytosol | 31.64 | 32.91 |
| Solyc05g051580.2.1 | Tomato | cytosol | 31.49 | 32.85 |
| Solyc09g074630.2.1 | Tomato | cytosol | 25.65 | 32.68 |
| Solyc02g092480.2.1 | Tomato | cytosol | 31.49 | 32.64 |
| Solyc02g064720.2.1 | Tomato | cytosol | 30.26 | 32.56 |
| Solyc10g049660.1.1 | Tomato | cytosol | 30.26 | 32.24 |
| Solyc08g006870.2.1 | Tomato | cytosol | 30.41 | 32.2 |
| Solyc05g013570.2.1 | Tomato | nucleus | 30.11 | 32.13 |
| Solyc03g044090.2.1 | Tomato | cytosol | 30.26 | 31.27 |
| Solyc01g098820.2.1 | Tomato | cytosol, extracellular | 24.42 | 28.7 |
| GSMUA_Achr3P25690_001 | Banana | nucleus | 46.85 | 25.54 |
Protein Annotations
| EnsemblPlants:Solyc02g090070.2.1 | EnsemblPlantsGene:Solyc02g090070.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:BTB/POZ_dom |
| InterPro:IPR000210 | InterPro:IPR027356 | InterPro:NPH3_dom | InterPro:SKP1/BTB/POZ_sf | ncoils:Coil | PANTHER:PTHR32370 |
| PANTHER:PTHR32370:SF8 | PFAM:PF03000 | PFscan:PS50097 | PFscan:PS51649 | SEG:seg | SMART:SM00225 |
| SUPFAM:SSF54695 | UniParc:UPI0002769059 | UniProt:K4BCF8 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2:-:51714109..51716921
Molecular Weight (calculated)
72883.6 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.431
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHTEHPTTK GQAWFCTTGL PSDIIIEVED MTFHLHKFPL MSKSRKLHEM ITEQETNASS SKIQKSAERD NDCDGDEEIE EEEDNEEDQQ YCISFPDFPG
101: GSETFETAAK FCYGVKIELS ALNVAPLRCA GEYLEMTEEY SEDNLISKTE RFLSQTVLKS IKDSIRTLNS CKNILPLAET LGIVQRCIDA VAVRASAADP
201: SLFGWPVNDH GPGNGVEAST RRKGANRGGG MDSWFEELGH LSLPLFKRLI SAMKSRDLCS EVIESCLMYY AKKYIPGISR SSRKTSSSSI PSENEQRELL
301: ETVITNLPTE ISSRTSTTTR ILFGLLRTAN ILNASEAARA ALERKIGSQL EHATLDDLLI PSYSYLNETL YDVACVERIL GYFLTGLEER STARIQGEEE
401: NISVRSTALM LVGKLIDGYL SEIASDNNLL PEKFCELAVA LPDQARLFDD GLYRAVDVYL KAHPWISEAE REQICGVMDC QKLTLEACTH AAQNERLPLR
501: AVVQVLFFEQ LQLRQAIAGT LMVADVNPEE IPRLSIMDVR EEEGEGGEQE EMTGVVGMGR AQEGRSTWRK TVRENQVLRL DMDSMRTRVQ ELERECSSMK
601: KVIQKIDKVG SREGGGGWRK KLGCKFKTQV CDSHEPTVVE AKKGRGQRHQ Q
101: GSETFETAAK FCYGVKIELS ALNVAPLRCA GEYLEMTEEY SEDNLISKTE RFLSQTVLKS IKDSIRTLNS CKNILPLAET LGIVQRCIDA VAVRASAADP
201: SLFGWPVNDH GPGNGVEAST RRKGANRGGG MDSWFEELGH LSLPLFKRLI SAMKSRDLCS EVIESCLMYY AKKYIPGISR SSRKTSSSSI PSENEQRELL
301: ETVITNLPTE ISSRTSTTTR ILFGLLRTAN ILNASEAARA ALERKIGSQL EHATLDDLLI PSYSYLNETL YDVACVERIL GYFLTGLEER STARIQGEEE
401: NISVRSTALM LVGKLIDGYL SEIASDNNLL PEKFCELAVA LPDQARLFDD GLYRAVDVYL KAHPWISEAE REQICGVMDC QKLTLEACTH AAQNERLPLR
501: AVVQVLFFEQ LQLRQAIAGT LMVADVNPEE IPRLSIMDVR EEEGEGGEQE EMTGVVGMGR AQEGRSTWRK TVRENQVLRL DMDSMRTRVQ ELERECSSMK
601: KVIQKIDKVG SREGGGGWRK KLGCKFKTQV CDSHEPTVVE AKKGRGQRHQ Q
001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS
Arabidopsis Description
BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.