Factsheet for TraesCS1B01G298700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G197100.1
TraesCS2B01G224600.1
TraesCS2D01G205000.1
TraesCS4A01G275400.1
TraesCS4B01G038900.1
TraesCS4D01G035800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	TraesCS2A01G197100.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2B01G224600.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS2D01G205000.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4A01G275400.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4B01G038900.1	AT1G03140.1	21798944
AT5G66560.1	TraesCS4D01G035800.1	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G093880.1	Barley	cytosol	84.78	84.38
TraesCS2D01G507400.1	Wheat	nucleus	77.54	58.36
TraesCS5A01G379300.1	Wheat	cytosol, plastid	88.16	56.07
TraesCS5B01G383100.1	Wheat	plastid	86.96	55.05
HORVU5Hr1G093850.15	Barley	mitochondrion	84.78	53.51
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	74.88	47.26
Zm00001d033941_P001	Maize	mitochondrion, plastid	70.77	46.43
OQU91026	Sorghum	cytosol, nucleus, plastid	63.28	43.81
VIT_00s0207g00230.t01	Wine grape	cytosol	48.79	31.81
GSMUA_Achr8P04840_001	Banana	cytosol	44.44	31.29
CDY45241	Canola	cytosol	44.93	31.1
Solyc02g090070.2.1	Tomato	nucleus	47.83	30.41
KRH28552	Soybean	cytosol	42.75	29.9
PGSC0003DMT400026008	Potato	cytosol	47.58	29.89
KRH08351	Soybean	cytosol	46.38	29.63
KRH76914	Soybean	cytosol	36.47	29.61
TraesCS5B01G408200.1	Wheat	cytosol	47.34	29.08
CDY30765	Canola	cytosol	44.44	29.02
AT3G50840.1	Thale cress	cytosol	39.86	29.0
CDX73781	Canola	cytosol	37.68	28.62
CDX77951	Canola	cytosol	37.44	28.28
KRH69999	Soybean	endoplasmic reticulum	46.14	28.09
AT5G66560.1	Thale cress	cytosol	45.17	27.99
Bra012082.1-P	Field mustard	cytosol	45.17	27.95
Bra036858.1-P	Field mustard	cytosol	37.68	27.18
TraesCS7B01G209700.1	Wheat	cytosol	36.72	23.64
TraesCS5B01G046200.2	Wheat	mitochondrion	36.47	23.52
TraesCS5B01G377600.1	Wheat	cytosol	37.68	23.01
TraesCS2B01G557300.2	Wheat	cytosol	33.33	21.33
TraesCS3B01G349200.1	Wheat	cytosol	32.37	20.71
TraesCS4B01G255500.1	Wheat	cytosol	27.54	18.84
TraesCS5B01G461900.4	Wheat	plastid	29.47	18.57
TraesCS6B01G237800.1	Wheat	cytosol	27.78	18.37
TraesCS5B01G145100.1	Wheat	plastid	27.78	18.25
TraesCS4B01G122300.1	Wheat	cytosol, plastid	24.88	18.04
TraesCS5B01G076500.1	Wheat	cytosol	24.88	16.59
TraesCS6B01G117400.1	Wheat	cytosol	29.47	16.53
TraesCS5B01G168600.3	Wheat	cytosol	23.19	16.0
TraesCS4B01G078900.3	Wheat	cytosol	24.4	15.93
TraesCS4B01G256600.1	Wheat	cytosol	23.19	15.87
TraesCS7B01G052800.1	Wheat	cytosol	24.15	15.31
GSMUA_Achr3P25690_001	Banana	nucleus	40.34	13.99
TraesCS5B01G222700.2	Wheat	cytosol	21.26	13.81

Protein Annotations

EnsemblPlants:TraesCS1B01G298700.1	EnsemblPlantsGene:TraesCS1B01G298700	InterPro:IPR027356	InterPro:NPH3_dom	ncoils:Coil	PANTHER:PTHR32370
PANTHER:PTHR32370:SF78	PFAM:PF03000	PFscan:PS51649	SEG:seg	MapMan:35.1	:

Description

No Description!

Coordinates

chr1B:+:520244380..520245924

Molecular Weight (calculated)

45336.3 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.197

Length

414 amino acids

Sequence
(BLAST)

001: MTEALEGCLV SYAKATLPGL SRSMRWRRAS APVSSEVEQR DLLEAVVASL PADKGSGSMV TAKFLVALLR TVHILRASDA ARAAIERKAA TQLEQATVED
101: VLIPSYSGAT ETLYDVDYVE RVLRHFLVEE EVGEDEASLS AAITEEEAAA RTMASRPLTV AMVQVGKLVD NYLAEVASDA NLKPTKFCEL ALAMPDHARI
201: YDDGVYRAVD IYLKAYPRLT AEERDRVCGV VDFRKLTVEA CTHAAQNERL PLRAVLQVLF FEQLQLRCAI MGTLIASMAS PRARHPNPRL QRPVAAVRHA
301: AGPSEAWQTT TVQESQTLRV DMDDMMSQVQ GLERECSSMR RAIKKIDGSG AASQGSGSPD VAAPAGWRSR YRCKFSTQVC DSQARNAVVS RASRMGMSLG
401: WVSRASKPSI DKRK

Best Arabidopsis Sequence Match ( AT3G50840.2 )
(BLAST)

001: MSKSKKLHQL ITEQEQSKVY SHIKLENFPG GSEIFEMVIK ISYGFKVDIS VSTAVPLRCA AEYLEMTEEY SPENLISKTE KFLSEFVFTN VQESIKALKA
101: CESVSSLAES LCITEQCIDS IVFQASSTDP SSFYGWPINN GGIFTVDRKK QSKDSKTELW FEDLTELSFP IFRRVILSMK SSVLSPEIVE RSLLTYAKKH
201: IPGISRSSSA SSSSSSSSTT IASENQQREL LETITSDLPL TATTTRSLFG LLRAAIILNA SENCRKFLEK KIGSNLEKAT LDDLLIPSYS YLNETLYDID
301: LVERLLRRFL ENVAVSSSSL TVVGRLIDGV LGEIASDANL KPEQFYNLAV LLPVQARVYD DGLYRAVDIY FKTHSWILEE EKEKICSVMD CRKLTVEGCT
401: HAAQNERLPL RAVVQVLFLE QLQLRQVITG TLLTEEDGDK TVVDLGRWKE AVKENQVLRL DMDTMRTRVN QLEKECLYLK KVIAKIDKES LLKAKHGAGK
501: WSIGKKFGCK FSAQVCDSQE ATMVDRRSRR FLS

Arabidopsis Description

BTB/POZ domain-containing protein At3g50840 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.