Factsheet for GSMUA_Achr3P25690_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P22980_001
GSMUA_Achr1P22990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	GSMUA_Achr10P...	AT1G03140.1	21798944
AT5G66560.1	GSMUA_Achr1P22980_001	AT1G03140.1	21798944
AT5G66560.1	GSMUA_Achr1P22990_001	AT1G03140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04840_001	Banana	cytosol	37.52	76.19
GSMUA_Achr9P26440_001	Banana	cytosol	26.8	54.98
VIT_00s0207g00230.t01	Wine grape	cytosol	26.05	48.98
CDY45241	Canola	cytosol	23.87	47.66
Solyc02g090070.2.1	Tomato	nucleus	25.54	46.85
PGSC0003DMT400026008	Potato	cytosol	25.46	46.13
KRH28552	Soybean	cytosol	22.7	45.78
OQU91026	Sorghum	cytosol, nucleus, plastid	22.7	45.32
KRH08351	Soybean	cytosol	24.54	45.22
Zm00001d033941_P001	Maize	mitochondrion, plastid	23.87	45.17
CDY30765	Canola	cytosol	23.87	44.95
EER93390	Sorghum	cytosol	25.38	44.82
Os03t0767600-01	Rice	cytosol	25.13	43.92
TraesCS5B01G408200.1	Wheat	cytosol	24.79	43.92
CDX73781	Canola	cytosol	20.02	43.85
TraesCS5D01G413400.1	Wheat	cytosol	24.71	43.83
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	24.04	43.75
TraesCS5D01G389200.2	Wheat	cytosol, plastid	23.7	43.74
TraesCS5A01G379300.1	Wheat	cytosol, plastid	23.79	43.63
CDX77951	Canola	cytosol	20.02	43.61
HORVU5Hr1G093880.1	Barley	cytosol	15.16	43.51
KRH69999	Soybean	endoplasmic reticulum	24.71	43.38
TraesCS5A01G403400.1	Wheat	cytosol	24.54	43.34
HORVU5Hr1G093850.15	Barley	mitochondrion	23.79	43.29
TraesCS2D01G507400.1	Wheat	nucleus	19.93	43.27
AT5G66560.1	Thale cress	cytosol	24.2	43.26
AT3G50840.1	Thale cress	cytosol	20.52	43.06
Bra012082.1-P	Field mustard	cytosol	24.12	43.05
TraesCS5B01G383100.1	Wheat	plastid	23.53	42.97
Zm00001d013182_P003	Maize	cytosol, mitochondrion	25.29	42.96
KRH76914	Soybean	cytosol	18.01	42.16
HORVU5Hr1G098170.1	Barley	cytosol, mitochondrion	24.12	42.04
Bra036858.1-P	Field mustard	cytosol	19.93	41.46
GSMUA_Achr6P30010_001	Banana	cytosol	18.76	40.88
TraesCS1B01G298700.1	Wheat	cytosol, plastid	13.99	40.34
GSMUA_Achr5P02440_001	Banana	cytosol	19.35	40.31
GSMUA_Achr9P26110_001	Banana	cytosol	19.68	38.78
GSMUA_Achr5P00550_001	Banana	cytosol	19.6	37.2
GSMUA_AchrUn_...	Banana	cytosol	13.07	36.71
GSMUA_Achr2P02890_001	Banana	cytosol	16.83	35.64
GSMUA_Achr4P31620_001	Banana	cytosol	17.76	35.51
GSMUA_Achr4P01950_001	Banana	cytosol	12.06	35.29
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	14.57	34.46
GSMUA_Achr7P21950_001	Banana	plastid	16.08	34.1
GSMUA_Achr6P27970_001	Banana	cytosol	14.24	32.88
GSMUA_Achr3P20380_001	Banana	cytosol	15.49	32.17
GSMUA_Achr8P30170_001	Banana	plastid	14.15	30.29
GSMUA_Achr10P...	Banana	cytosol	13.9	30.02
GSMUA_Achr1P11260_001	Banana	plastid	14.24	29.67
GSMUA_Achr7P26300_001	Banana	cytosol	14.66	29.56
GSMUA_Achr8P16390_001	Banana	cytosol	12.81	29.31
GSMUA_Achr5P01710_001	Banana	cytosol	14.15	29.09
GSMUA_Achr4P10900_001	Banana	cytosol	13.4	28.73
GSMUA_Achr10P...	Banana	cytosol	13.57	28.47
GSMUA_Achr11P...	Banana	cytosol, plastid	13.74	28.32
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	14.07	28.0
GSMUA_Achr3P04740_001	Banana	cytosol	13.74	27.8
GSMUA_Achr10P...	Banana	cytosol	12.98	27.53
GSMUA_Achr1P21440_001	Banana	cytosol	13.82	27.14
GSMUA_Achr7P26250_001	Banana	cytosol	14.15	27.08
GSMUA_Achr2P13430_001	Banana	cytosol	14.07	25.04
GSMUA_Achr3P12020_001	Banana	cytosol	10.8	23.63
GSMUA_Achr3P14590_001	Banana	cytosol	10.8	22.51

Protein Annotations

Gene3D:1.10.630.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	InterPro:Cyt_P450
InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0020037	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G25690_001
EnsemblPlants:GSMUA_Achr3P25690_001	EnsemblPlants:GSMUA_Achr3T25690_001	InterPro:IPR000210	InterPro:IPR027356	InterPro:IPR036396	UniProt:M0SHT5
InterPro:NPH3_dom	PFAM:PF00067	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR24286
PANTHER:PTHR24286:SF95	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF48264	SUPFAM:SSF54695	UniParc:UPI000295E4C6
SEG:seg	:	:	:	:	:

Description

Allene oxide synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G25690_001]

Coordinates

chr3:+:25788319..25799485

Molecular Weight (calculated)

131532.0 Da

IEP (calculated)

7.146

GRAVY (calculated)

-0.266

Length

1194 amino acids

Sequence
(BLAST)

0001: MKEEIESIEL SFDKNQLVEK AIGIGWDQWR FAESTSNTTH ETSTSIGAIR RRLRTIQYSS RPTNCSPIMV LSSSTISTTP PTHVPTMAES DAAPTVKEIP
0101: GSYGVPFVSP IRDRLDFYYF QGADKYFQSR VDKYHSTVIR LNVPPGPFMA SDPRVVAVLD AKSFPVLFDV SKVEKKDVFT GTYMPSTSLT GGYRVCSYLD
0201: PSEPSHAKVK QLLFNVLASR KDAVSDFNKL NDNTSFEFLG EAYFGVRPSS TELGATGPTK STKWLFLQLC PLMTLGLPKI LEELLLHTFP LPPLIAKGDY
0301: KALYKYFSDA AGSALDSAEK LGLSREEACH NLLFATVFNS YGGMKVLLPG ILGWLAKAEE SLHARLAKEI RAAVAGEGGK VTLNAVEKME LTRSVVYEAL
0401: RMDPPVKYQY GKAKQDLVIE SHDAAYQVKK GEMIFGYQPL ATRDPKVFDK AEQFIGDRFL GDEGKKLIKY VVWSNGPETE TPSVANKQCP GKELVVLVGR
0501: LLVVEFFLRY DTFTADVGTI LLGSQVTVTS LTKSSYSSSS TTTTNLRQWD VRGTSVSFGS KDLVLHKEAA MAAEKLAPKG QAWFCTTGLP SDTVLEVDGM
0601: SFHLHKFPLM AKSGRLQRLI TELEDHPTDA PGRRGEQRNC EAFETAAKFC YGVKIDLNAW NVAPLRCVAE YLEMTEEFGE DNLVARAERF LARSVLPSIK
0701: QSIKTLKSCE DLLPLADDLG IAQRCVDAIA AGATGVRSSS FAAAAAAAAT AAGSWLEDLA ILSLPMYKRV IAALKARELS SDAIEGSLMS YARQSIPGLS
0801: RSRRKHSSAP IASEPEQREL LETVITNLPL EKSSAARAAL ERKIAFQVER ATLDDLLIPS YSYLSETLYD VVGGAARTPS RAGSLKLVGK LVDGYLAEIS
0901: SDANLKVDKF YGLAVALPDD ARVYHDGLYR AVDIYLKAHP RMTEEEKETV CGVMDCRKLT LEACTHAAQN ERLPLRAVVQ AAAPAAGGDG GGAWRATMRE
1001: NQVLRLDMDS MRSRVQELER ECSSMKKTLA KLDEGGEGGG AAGEEEGEPR RRKERRFGCR FSTQSRREAN VRELNRQCME LHDLVEAEKK KRDALEKAVK
1101: KERAGRTFLW DADVESLGME ELQEFERRLA ELRSSVARRA DQVLQETLAR KQQLPVIGND VGVPGAFAVK HEVDVHPSLP SGFFGYGHGF FGSM

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.