Factsheet for GSMUA_Achr4P01950_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04740_001	Banana	cytosol	86.27	59.66
VIT_04s0008g06630.t01	Wine grape	cytosol	70.34	46.29
KRH15648	Soybean	cytosol	68.63	45.53
PGSC0003DMT400022573	Potato	cytosol	68.14	45.2
KRH05372	Soybean	cytosol	67.89	44.97
Solyc08g006870.2.1	Tomato	cytosol	67.16	44.55
Os09t0420900-01	Rice	cytosol	67.16	44.34
KRH52322	Soybean	cytosol	66.18	44.19
EER98911	Sorghum	cytosol	66.91	44.1
Zm00001d005769_P001	Maize	cytosol	66.42	43.36
HORVU5Hr1G064620.1	Barley	cytosol	67.4	43.17
TraesCS5B01G222700.2	Wheat	cytosol	67.16	43.01
AT4G31820.1	Thale cress	cytosol	60.05	42.91
TraesCS5D01G231300.1	Wheat	cytosol	66.67	42.7
CDX68790	Canola	cytosol	59.8	42.66
Os06t0184500-00	Rice	cytosol	66.42	42.08
Zm00001d020512_P001	Maize	cytosol	66.67	41.91
EER89339	Sorghum	cytosol	65.2	41.89
CDX75198	Canola	cytosol	59.07	41.77
Bra011301.1-P	Field mustard	cytosol	59.07	41.77
Zm00001d045098_P001	Maize	cytosol	65.2	41.76
KRH61660	Soybean	cytosol	63.97	41.36
TraesCS5A01G223800.1	Wheat	cytosol	66.42	40.87
GSMUA_Achr5P01710_001	Banana	cytosol	56.86	39.93
TraesCS7A01G149100.1	Wheat	cytosol	63.97	39.85
TraesCS7D01G150700.2	Wheat	cytosol	63.73	39.76
TraesCS7B01G052800.1	Wheat	cytosol	63.48	39.66
GSMUA_Achr10P...	Banana	cytosol	54.41	39.02
GSMUA_Achr4P10900_001	Banana	cytosol	52.21	38.24
HORVU7Hr1G030460.8	Barley	cytosol	60.29	37.27
GSMUA_Achr7P26250_001	Banana	cytosol	55.64	36.38
GSMUA_Achr2P13430_001	Banana	cytosol	59.8	36.36
GSMUA_Achr8P16390_001	Banana	cytosol	40.69	31.8
GSMUA_Achr10P...	Banana	cytosol	42.89	31.08
GSMUA_Achr5P02440_001	Banana	cytosol	43.63	31.06
GSMUA_Achr6P30010_001	Banana	cytosol	40.69	30.29
GSMUA_Achr3P20380_001	Banana	cytosol	42.65	30.26
GSMUA_Achr9P26110_001	Banana	cytosol	44.85	30.2
GSMUA_Achr2P02890_001	Banana	cytosol	40.93	29.61
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	36.52	29.5
GSMUA_Achr5P00550_001	Banana	cytosol	44.61	28.93
HORVU1Hr1G034650.1	Barley	plasma membrane, vacuole	45.83	28.81
GSMUA_Achr4P31620_001	Banana	cytosol	41.67	28.48
HORVU7Hr1G097110.6	Barley	cytosol	37.01	27.86
GSMUA_Achr3P12020_001	Banana	cytosol	37.25	27.84
GSMUA_Achr3P14590_001	Banana	cytosol	37.5	26.7
GSMUA_AchrUn_...	Banana	cytosol	27.45	26.35
GSMUA_Achr8P04840_001	Banana	cytosol	37.01	25.68
GSMUA_Achr9P26440_001	Banana	cytosol	36.52	25.6
GSMUA_Achr6P27970_001	Banana	cytosol	31.13	24.56
GSMUA_Achr7P26300_001	Banana	cytosol	34.56	23.82
GSMUA_Achr7P21950_001	Banana	plastid	32.84	23.8
GSMUA_Achr8P30170_001	Banana	plastid	32.11	23.48
GSMUA_Achr1P21440_001	Banana	cytosol	34.07	22.86
GSMUA_Achr1P11260_001	Banana	plastid	31.86	22.69
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	33.09	22.5
GSMUA_Achr11P...	Banana	cytosol, plastid	31.37	22.11
GSMUA_Achr10P...	Banana	cytosol	29.41	21.7
GSMUA_Achr3P25690_001	Banana	nucleus	35.29	12.06

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_NPY1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0009987	GO:GO:0060918	GO:GO:0099402	EnsemblPlantsGene:GSMUA_Achr4G01950_001	EnsemblPlants:GSMUA_Achr4P01950_001
EnsemblPlants:GSMUA_Achr4T01950_001	InterPro:IPR000210	InterPro:IPR027356	UniProt:M0SKB2	InterPro:NPH3_dom	PFAM:PF03000
PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF7	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695
UniParc:UPI00029589BE	SEG:seg	:	:	:	:

Description

Putative Root phototropism protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01950_001]

Coordinates

chr4:-:1731789..1737197

Molecular Weight (calculated)

44903.8 Da

IEP (calculated)

9.110

GRAVY (calculated)

-0.024

Length

408 amino acids

Sequence
(BLAST)

001: MKFMKLGSKP DAFQSDGGNI RFVVSELPTD VSVRIGEVRF YLHKFPLLSK SNRLQGLILR VGEDSTNEIF LHDFPGGPKA FEICAKFCYG MIVTLNAYNV
101: VAARCAAEYL EMTENVEKGN LIYKIEVFLN SSVLRSWKDS IIVLQATKSL LPWSEELKVA GRCIDCIASK TSEQDSVVIL VGAGDALKEE LINRISMQFH
201: KASVKDLLIP AKSGGDTIYD VHLVQILVGK FMVHNKTLLP MGKLIDGYLA EIASDPNLSI SSFVDLAKSI PDAARPGHDG LYMAIDIYLK EHPNLSKAEK
301: KRICGLMDVK KLSTEASIHA AQNELLPLRV VVQVLFFERL KASTGLGSLK IKGVESRRIF DKLWVGKGQG ETIKSSETSG SSQSPPICVK PGEAKSSGSS
401: RRMRYSIS

Best Arabidopsis Sequence Match ( AT2G14820.1 )
(BLAST)

001: MKFMKIGSKL DSFKTDGNNV RYVENELASD ISVDVEGSRF CLHKFPLLSK CACLQKLLSS TDKNNIDDID ISGIPGGPTA FETCAKFCYG MTVTLSAYNV
101: VATRCAAEYL GMHETVEKGN LIYKIDVFLS SSLFRSWKDS IIVLQTTKPF LPLSEDLKLV SLCIDAIATK ACVDVSHVEW SYTYNKKKLA EENNGADSIK
201: ARDVPHDWWV EDLCELEIDY YKRVIMNIKT KCILGGEVIG EALKAYGYRR LSGFNKGVME QGDLVKHKTI IETLVWLLPA EKNSVSCGFL LKLLKAVTMV
301: NSGEVVKEQL VRRIGQQLEE ASMAELLIKS HQGSETLYDV DLVQKIVMEF MRRDKNSEIE VQDDEDGFEV QEVRKLPGIL SEASKLMVAK VIDSYLTEIA
401: KDPNLPASKF IDVAESVTSI PRPAHDALYR AIDMFLKEHP GITKGEKKRM CKLMDCRKLS VEACMHAVQN DRLPLRVVVQ VLFFEQVRAA ASSGSSTPDL
501: PRGMGRELRS CGTYGSSRSV PTVMEDEWEA VATEEEMRAL KSEIAALKLQ EESGRKSMDR AGVTAISKIR SLIMSKKIFG KKVQLQSKGG GEKNNGGGGG
601: GSDSSESLGS MNAAEETAKT ATPSRNLTRR VSVS

Arabidopsis Description

NPY2BTB/POZ domain-containing protein NPY2 [Source:UniProtKB/Swiss-Prot;Acc:O80970]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.